AMCG00017421


Basic Information

Item Value
gene id AMCG00017421
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2696109 ~ 2708643 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017421
AATACGGCACTTTTACCCCGGAAACAGTATCCTCCAGTTCCGTGCTGCTGTGCTGAGTGTGCGGTGAAGATGGCGAGCGGAGGGGTCTCTGTCGCGGCGCTGTGGACTGAAGTCAACCGCTGCGGGCAGGCTGGGGACTTTACCCGAGCCCTCAAATCCGTCAATAAAATTCTCCAGGAATGTAAAGACGACATAACAGCTCTGCGTTGTAAAGTCGTATGCCTTATTCAAAATGGCAGTTTCAAGGAAGCCCTGAATGTTATTCATACTCACACAAAAGTACTTGGCAGCGATGTAATTGCCTTTGAAAAAGCCTACAGTGAATACAGGCTGAACCGGGTAGAAAATGCCTTGAAGACAATTGAGAGTGCCACCCAGCAGACTGATAAACTGAAGGAACTCTATGGCCAAGTGGAAGACCTGGGCCTGCCGGAGACCAGCTATGAGCTGTGCTACAACTCTAGCTGTACACTTATCGGTCAAGGCAAGCTCACAGAAGCCATGAAGAAGCTCCAAGAAGCAGAGGAGCTGTGCCGACAGTCATTGTCTGAGGATTCCGACATGACAGAGGAAGATATTGACTCTGAGCTGGCTGTGATCCATTCCCAAATGGCATACGTCATGCAGTTACAGGGGCGGACTGAGGATGCACTGCAACTATACAATCAAGTCATCAAACTCAAgcCAACAGATGTGGGATTACTGGCGGTGACGGCCAATAACATCATTACAATAAATAAGgACCAAAATGTGTTCGACTCCAAGAAAAAGGTGAAGTTGACAAATGCGGATGGAGTGGAGCACAAACTGGCCAGGAAGCAACTGCAGGCTATTGAGTTTAACAAGGCTCTACTAGCCATGTACACCAATCAGGCAGAGCAGTGCCGTAAACTGGCATCCGATTTACAGACCCAGAACCCGGGGCACCCGCGCCCGGTGCTGATTCAGGTGGCGCAGCTCTGTAGAGAGAAGCAGCACTCGAAGGCTGTAGAACTGCTACAGATTTCTGCTCTGGTTACAATGTACAGTCATGAGGAACACATTGACAGTGCTATTGATATCTTCAGCCAAGCTATTCAGCACTACCAGAAACAACAGTCTGGTTCATCGGTTCATCTATCTCTTGTACGGGAAGCAGCCAATTTCAAGCTGAAGTACGGAAGGAAAAAGGAAGCTATAAGTGACCTGGAGCAGCTTTGGAAGCAGAACAGAAAGGACATACACACCCTTGCACAACTCATCTCTGCTTATTCTTTGGTGGATCAAGAAAAAGCTAAATCTCTCAGCAAATTTCTCCCATCCCCCGACACCATGTCTTTTAATGTGGACGTTGTTGAGCTGGAGAACTCGCACGGAGCCACATATATTCGAAAGAAGGCTGCTAAAGTGATTGGGGAAAATAGTCCCAAAGAACAAGGCCAGGAGGAtgtgaaaaagaagaagaagaaaaaaaaggGTAAAATGCCAAAGAACTACGACCCTAAAGTGGCTCCAGACCCTGAGCGCTGGCTACCGATGCGGGAACGGTCCTACTACCGTGGGAGGAAGAAGGGCAAGAAGAAGGAGCAAGTGGGCAAAGGAACACAGGGGGCCATGTCTGGGGGATCCGCTGAACTggaTGCTAGTAAATCTGCAAgcagcccccccacctccccaagACCTGGCTCAGCTTCCACATCAGCTGCTTCAAGCAACATAGTCCCCCCCAGACAGCAAAAACCAGCAGCCTCTGGAGCCACCAGGAAGAAACCccaacagaagaagaagaaaggcaAAGGCTGGTAGTGCTTAGAGGCCTAGAGAGAGTCTTTATAAAACTGCAGATGTAATGCACAGTAAAAATAATTCATGGGTTTGAAGCACCAAGAAGCAGGAGCTTGtcttaatatataatatatacacatggtTTCACTTCTGGTTAGAAATGAGGAAGTGTATCATGTTTGCAATACTTTTGATTGTTGCCCCCAGGCCCTTTAACTTGATATTGAgctaaatacatttgctttccaAGATAACACGTCTAAACTGCTAAGGTTTTTAAATCACTGTGGTTAACATAATGACAAAGGTGACAAAGTAATGGTAACGAAAAACGATGTGAAATTAAACCTATAAACACGTGTAAAGAGAAGTGAAACAGATTGACAGAATACCAGGCAAGTATTGTACGCTCATCGATTGAAACCTTGTTTGTATTCTTCTGCTTATGTTAACCACCAGGTCCAAGGTTTTGTTCTTTATACACAAATCTGAATATGTTTTGTTGTAGGGTTTGGATGTCCATGATGAATTTATAGTCCTTTCCATAATCAAAAACATGTAGACAACCATCTGAACTCTGGCTTCACTCTCAACACAATTCCTTGTTCATTCTTAAAGGGTTGACATTTATTAAAGTACACCTTTGTTTATCAccatatttgtttgtctttcaggTCTGTAGTATCAAATGTTTGAACTTGCTTTTGTTCTAGCAACCACTTAAACATTCACTTCAGATAACCAAAGGCTGAAATATAAATTGACATTCCCACATTGAACGCATATGGTGTTCATTAGCTTTCATGTGTAATTTCAGTATTCAGAACTCTATACAACATGTAAGGAAACTTCAAATCATATCGGCAGATGAGTTTTCAATAGAGAgatttttaaatactaaattCAAAGAGGAAACAAATTGACAATTTTGGTTTTCAAGTTAATCTGCCAGCCAATGTAGGTGTTtgaattagatttgttttatccCCAGCTGCACCTATATCCTTAGTATGCTGTTTGAGGCAATCTGTTTATGGGGTATGCAATAtgttataaatcacatatgataGAAAAGCATTTCCGTAAATTCGTATAcctcttgtgtataaatgtcaccATGTTCAtagaattatcagtatttaaacaTCCTTCAGTTGCCAAGGACATTTCAGGACACTTATTGCTAGTGGtgcaagtttttttattttttgtacatttatttttaatagttttgttacatttaacaacatgaaaacacaacacacgcaggcatttgtagttacAACACTTTTAGACTGAGAGAAGGGGTtgattgttacatttaatttaaataagtgtcTATATTTGTCTACTTCTGatgtgtgtaatttataattGGTTAATAGAAGCATGACTTGTTGTATAAGAGatgta

Function

GO: NA

KEGG:

id description
K03108 SRP72; signal recognition particle subunit SRP72

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017421 True 3177 mRNA 0.42 16 2696109 2708643

Neighbor

gene id symbol gene type direction distance location
AMCG00017424 NA coding upstream 12601 2674951 ~ 2683508 (+)
AMCG00017419 NA coding upstream 31556 2662686 ~ 2664553 (+)
AMCG00017416 NA coding upstream 46626 2646274 ~ 2649483 (+)
AMCG00017415 LOC103458261,LOC105909588 coding upstream 97139 2573489 ~ 2598970 (+)
AMCG00017413 fgfr3 coding upstream 235590 2427893 ~ 2460519 (+)
AMCG00017420 NA coding downstream 428 2709071 ~ 2712473 (+)
AMCG00017423 suclg1,LOC107674246,LOC106602756 coding downstream 4514 2713157 ~ 2726827 (+)
AMCG00017427 NA coding downstream 567020 3275663 ~ 3481722 (+)
AMCG00017428 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523 coding downstream 858617 3567260 ~ 3568720 (+)
AMCG00017429 NA coding downstream 1480605 4189248 ~ 4199454 (+)
G90149 NA non-coding upstream 167308 2491907 ~ 2528801 (+)
G90144 NA non-coding upstream 191945 2461882 ~ 2504164 (+)
G90070 NA non-coding upstream 691503 2003038 ~ 2004606 (+)
G90042 NA non-coding upstream 761325 1929142 ~ 1934784 (+)
G89983 NA non-coding upstream 1106304 1580983 ~ 1589805 (+)
G90248 NA non-coding downstream 528802 3237445 ~ 3237726 (+)
G90284 NA non-coding downstream 1189175 3897818 ~ 3898125 (+)
G90333 NA non-coding downstream 1603615 4312258 ~ 4312475 (+)
G90337 NA non-coding downstream 1621727 4330370 ~ 4330583 (+)
G90338 NA non-coding downstream 1676598 4385241 ~ 4390541 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 656 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 2484173 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 2597712 48007 ~ 98397 (+)
AMCG00017445 NA other downstream 1884159 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 1953982 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4021095 6729738 ~ 7188643 (+)
G90877 NA other downstream 4959540 7668183 ~ 7671850 (+)
G90881 NA other downstream 4983942 7692585 ~ 7693347 (+)

Expression


Co-expression Network