AMCG00017426


Basic Information

Item Value
gene id AMCG00017426
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2711302 ~ 2841894 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017426
ATGCAGAAGGCAGTTGGATTTTGTCCCGAGCCAGCTGTGGAGTTCCTTCATGGACAAGACATTGATGTAGTCACTCTACAAGTTTCCCATTGCAAACACCTGTGTGAACGATATGAAGATTTTAAGGCCAATATAGACTTTGCTCTTTGCAACACCCAAGGCTTTGGACTGGAGTTgCGGATGGAGTTAaagATTGCaatgaaatatattgaaatcatAGGTGTTGAGATCGGGGGGGACGCCACGGAAGATCAGAGTCTCTTCAGACAGGAGTCGAGACACGGACTTGGAGACGGAGAGGAACTCCTGGAGAAGACGGTTATGGTTTCAGGGGTGAACAGAAGTCTGCACCACTGGCAAGGGGAAGTGGTGGAGACTTCCCTCTACAGGCACAGTTGCTGTGCTCTTACCTTGAACATGGTGCTGCCCAGCTGTGCAGGGGACATGCTGACCACCACTCCTGCCCGCTGCAGGGCCGCGATCTTCTCCTTGGCACCCCCTTTGCCTCCTGCAATGATGGCCCCAGCGTGGCCCATTCGCCTGCCTGGAGGAGCATCCATGAAGGTGCGTCTTTGCCAAAGGAAAGCGGTCCGGGTCAGCAGAGTCCACTACAAACACCAACACCTGGGCCTTGCCGAG
>TU112506
gtcaGAACAATGTCAAAGAcaaatttattaatttcttctaGTGTACATTTTGTGTACAGATTGCaatgaaatatattgaaatcatAGGTGTTGAGATCGGGGGGGACGCCACGGAAGATCAGAGTCTCTTCAGACAGGAGTCGAGACACGGACTTGGAGACGGAGAGGGTGTTGTGCAGTTGTGCTGTTCTTTGCTTGTTATTTACAACATCTTTCTCTTCTCAAATTCCTGAACATGGTGCTGCCCAGCTGTGCAGGGGACATGCTGACCACCACTCCTGCCCGCTGCAGGGCCGCGATCTTCTCCTTGGCACCCCCTTTGCCTCCTGCAATGATGGCCCCAGCGTGGCCCATTCGCCTGCCTGGAGGAGCAGTCAAGCCAGCGATGAACGACACCACAGGCTTGGCATTGGCaccctgcaaaacacacacattattaaacaAGTTCACTTCAAAATAACAACCCAAAAGTCCCCAAAGCATctcaaaaatgtataacagcAGGGAGTGAGACactgtgaatattttaaagcatttcctttgtattatttacaaagCGTAAACATAATTCACAGTGTGTTTTCTAGTATATTTGTCaaagctctctctctgatgATCACAAAtaaattttaagttttttaaatgaaaggaattaaataaaaaaggtttctaTAAGGAATCTCTTGGATCACCCCTTAAGATTAAAAACAgtggaatacattttattgtacaagTTGATGCATCAATTATCAAATTGTACTTGTCTGTACTCAGTACCATTTAATATGTGTACTGAACTCTCATGGGAAGTAAGGGCCCTCTTTTTCCCCACCTGTATAGTGAGGGGTcacttttgaaaacatttaaacaaaaacttttttgaGGCTAAATCGCCCAAGATTATAGTGAATCGATTTTATACCCTGAAGGATACTGTCCTTGGTGCTGTTGCACAGAAGCTTAGTGATTAATTTCCAAACCACTGCTATTATCTAAATCAAAAAAACCTATTAATATGTATAGATTTTATAGCAAATAATTCCCTCAATTGCAGTGGCcttgttttaaatctattttattggCTTTATACTGAGAATAATCACCTATGAGAGACAGCTATAAGACCTCAC

Function

GO: NA

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017426 False 639 mRNA 0.53 8 2711302 2841894
TU112506 True 1130 lncRNA 0.39 2 2725184 2728350

Neighbor

gene id symbol gene type direction distance location
AMCG00017417 letm1 coding downstream 145025 2528915 ~ 2566277 (-)
AMCG00017414 NA coding downstream 284175 2076178 ~ 2427127 (-)
AMCG00017406 NA coding downstream 679086 2023432 ~ 2032216 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 695740 2005759 ~ 2015562 (-)
AMCG00017407 loxl3,LOC108441751 coding downstream 717761 1985621 ~ 1993541 (-)
AMCG00017425 NA coding upstream 28 2841922 ~ 3087650 (-)
AMCG00017430 ctnna2 coding upstream 587727 3429621 ~ 3487525 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 687789 3529683 ~ 3539396 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding upstream 895919 3737813 ~ 3747843 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 934600 3776494 ~ 3799472 (-)
G90157 NA non-coding downstream 247043 2373110 ~ 2464259 (-)
G90139 NA non-coding downstream 425773 2285225 ~ 2285529 (-)
G90129 NA non-coding downstream 525563 2185385 ~ 2185739 (-)
G90098 NA non-coding downstream 632058 2079040 ~ 2079244 (-)
G90093 NA non-coding downstream 655939 2054839 ~ 2055363 (-)
G90243 NA non-coding upstream 97356 2939250 ~ 2939477 (-)
G90244 NA non-coding upstream 98041 2939935 ~ 2940143 (-)
G90252 NA non-coding upstream 513171 3355065 ~ 3355489 (-)
G90255 LOC100846954 non-coding upstream 562592 3404486 ~ 3404766 (-)
G90281 NA non-coding upstream 830401 3672295 ~ 3685214 (-)
AMCG00017418 NA other downstream 95740 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 2359516 160054 ~ 351786 (-)
G89804 NA other downstream 2605417 105685 ~ 105885 (-)
G90400 NA other upstream 1700881 4542775 ~ 4544760 (-)
G90501 NA other upstream 2316490 5158384 ~ 5221021 (-)
G90502 NA other upstream 2380579 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 3545358 6387252 ~ 6389038 (-)
G90746 NA other upstream 3891341 6733235 ~ 7188648 (-)

Expression


Co-expression Network