AMCG00017427


Basic Information

Item Value
gene id AMCG00017427
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3275663 ~ 3481722 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017427
ATGGTGAATGGAAGAGATGTGCTCCTATTAACTGCCACTCAAAATATACCGCAGCGAGGTCATCGAGAGTCTGATGACTCTCAAAACAaggGTCTCACAAAAATGATAATTGATTGCCTTGAAAAACATGGTCTGGACTACAAAAATAATCTTGTGGGGCAAGGCTATGACCATGCATCCGTCATGAGCGGAAAGCATTCTGTGGCAGTTCAGAAAGAGCTGTATCCACAGCAGCAGCCCAGGGAACTACAGAGACTTACAGGAGCGGCCCTGGCCCTGCCTGGTTGGTCTATGCCGTCTCTTGGTGTGGTCGGAGGGGCGCTGGGTCCGCTGGCTTGTCAGGGGGTCCTGAGAGGCCAGAGAACAAGCCACTGGAGGCTCTACCTTCTTCAGGACCATCCTGAGAGAGCCGGGATTGGAGGGGTCACAGGCTCTAGTTATGACTTCCCACCAAGGCTTGTGTCCCTTCTGAGGACTTTTCTTATGAACGAGGGCTTCCTGGACAAGAGCCTCATTCCCCAGGAAGAAGACTATGGTCGTACACGCACAGTCCAGCATCGGATCCTGACTGGAGAGGCACCCCCCACTCGAGGGATGGACGGCACCAGCTCCAACAAGGGAACGGGGCTTCTTTTCGGGGGCTTTCATCCTCCAGGAGACCACGGGCGAGTTCACAGCAGCAGTGCCATAGACTTTCTGAAGAAAAACCTCGGGTTAAAATCTTGTAAGAAGCCCAAGGACTCCGGATTTGAAAAGAATAAGCAGTACCGGTCTCGCCTCAATGACAGCTGCAAGGTCTGCCAATCCAACAGCTGGATCAGGGACAAAAACCACATCCTCGTGTATCAGgcACTGATGCAGGATCTTCCTGGGTCTAAAttgGTGTTGGTCATCGTCACAAATGAGATATCCCTTGTGCTACAGTGTGATGCGATGATGTCAAATACCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017427 True 951 mRNA 0.52 12 3275663 3481722

Neighbor

gene id symbol gene type direction distance location
AMCG00017423 suclg1,LOC107674246,LOC106602756 coding upstream 548836 2713157 ~ 2726827 (+)
AMCG00017420 NA coding upstream 563190 2709071 ~ 2712473 (+)
AMCG00017421 NA coding upstream 567020 2696109 ~ 2708643 (+)
AMCG00017424 NA coding upstream 592155 2674951 ~ 2683508 (+)
AMCG00017419 NA coding upstream 611110 2662686 ~ 2664553 (+)
AMCG00017428 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523 coding downstream 85538 3567260 ~ 3568720 (+)
AMCG00017429 NA coding downstream 707526 4189248 ~ 4199454 (+)
AMCG00017439 rnf24,LOC107689472 coding downstream 901610 4383332 ~ 4384747 (+)
AMCG00017449 NA coding downstream 1146493 4628215 ~ 4633610 (+)
AMCG00017450 NA coding downstream 1208156 4689878 ~ 4691955 (+)
G90248 NA non-coding upstream 37937 3237445 ~ 3237726 (+)
G90149 NA non-coding upstream 746862 2491907 ~ 2528801 (+)
G90144 NA non-coding upstream 771499 2461882 ~ 2504164 (+)
G90070 NA non-coding upstream 1271057 2003038 ~ 2004606 (+)
G90042 NA non-coding upstream 1340879 1929142 ~ 1934784 (+)
G90284 NA non-coding downstream 416096 3897818 ~ 3898125 (+)
G90333 NA non-coding downstream 830536 4312258 ~ 4312475 (+)
G90337 NA non-coding downstream 848648 4330370 ~ 4330583 (+)
G90338 NA non-coding downstream 903519 4385241 ~ 4390541 (+)
G90413 NA non-coding downstream 1216216 4697938 ~ 4710074 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 580210 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 3063727 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 3177266 48007 ~ 98397 (+)
AMCG00017445 NA other downstream 1111080 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 1180903 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 3248016 6729738 ~ 7188643 (+)
G90877 NA other downstream 4186461 7668183 ~ 7671850 (+)
G90881 NA other downstream 4210863 7692585 ~ 7693347 (+)

Expression


Co-expression Network