AMCG00017430 (ctnna2)


Basic Information

Item Value
gene id AMCG00017430
gene name ctnna2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3429621 ~ 3487525 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017430
ATGGAGgtcGCAAACTTGGCCTGTTCAATCTCCAATAATGAAGAAGGTGTGAAGCTGGTCCGTATGGCAGCTACCCAGATCGATAGCTTGTGCCCACAGGTAATCAATGCTGCCCTCACCCTGGCCGCCAGACCGCAGAGCAAAGTGGCCCAGGACAACATGGACGTGTTCAAAGACCAGTGGGAGAAGCAGGTCCGCGTTCTCACCGAGGCTGTTGATGACATCACTTCTGTTGATGACTTCTTATCCGTCTCAGAAAACCACATCCTGGAAGATGTGAACAAGTGTGTCATTGCTCTCCAGGAGGGGGACGTTGACACTTTAGATCGAACCGCTGGTGCGATCCGTGGTCGAGCTGCCAGGGTGGTTCACATCATAAATGCAGAGATGGAGAACTATGAGCCGGGAGTTTATACTGAGCGGGTTTTGGAAGCCATCAAATTACTCTCTGAGACTGTTATGCCACGTTTTGCTGAACAAGTCGAGGTTGCAATTGAAGCATTGAGCACAAATCCCCCGCAGCCATTTGAAGAGAATGAATTCATTGATGCTTCCCGCTTGGTCTACGATGGAGTTCGTGACATCAGGAAAGCTGTTTTGATGATAAGGACCCCAGAGGAGCTCGAGGATGACTCTGACTTTGAACAAGAGGACTATGATGCACGCAGCAGGACGAGTGTTCAGACTGAAGACGATCAGCTTATTGCAGGACAGAGCGCCCGGGCAATTATGGCTCAGCTGCCCCAAGAAGAGAAAGCTAAAATTGCAGAGCAGGTTGAGAGTTTCCGCCAGGAGAAGTGCAAGCTGGACGCTGAAGTGGCCAAGTGGGACGACAATGGCAACGACATCATTGTGCTGGCTAAACAGATGTGCATGATCATGATGGAAATGACAGACTTTACcagAGGCAAAGGCCCACTGAAGAATTCATCGGATGTGATTAATGCAGCTAAGAAGATTGCCGAAGCCGGCTCCAGGATGGACAAACTCGCCCGCGCTGTTGCTGATCAGTGCCCTGATTCAGCCTGTAAGCAGGACTTGCTGGCATACCTGCAGAGAATTGCACTCTACTGTCATCAGCTGAACATCTGCAGCAAGGTGAAGGCTGAGGTGCAGAACCTCGGAGGAGAGCTCATCGTGTCCGGGctGGACAGTGCAACATCACTCATCCAGGCAGCCAAAAACCTGATGAATGCTGTTGTGCTTACTGTGAAGGCCTCCTATGTGGCTTCCACAAAATACCAGAAAGTCTATGGCACTGCTGCTGTGAACTCGCCCGTGGTCTCCTGGAGGATGAAAGCCCCCGAAAAGAAGCCCCTGGTCAAGAGGGAGAAGCCAGAGGAGTGCCAGACCCGAGTGAGACGGGGCTCACAGAAGAAACACATCTCCCCTGTTCAGGCTCTGAGCGAGTTTAAGGCCATGgatgccttttaa

Function

symbol description
ctnna2 Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2).

NR:

description
PREDICTED: catenin alpha-2

GO: NA

KEGG:

id description
K05691 CTNNA; catenin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017430 True 1434 mRNA 0.51 10 3429621 3487525

Neighbor

gene id symbol gene type direction distance location
AMCG00017425 NA coding downstream 341971 2841922 ~ 3087650 (-)
AMCG00017417 letm1 coding downstream 863344 2528915 ~ 2566277 (-)
AMCG00017414 NA coding downstream 1002494 2076178 ~ 2427127 (-)
AMCG00017406 NA coding downstream 1397405 2023432 ~ 2032216 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 1414059 2005759 ~ 2015562 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 42158 3529683 ~ 3539396 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding upstream 250288 3737813 ~ 3747843 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 288969 3776494 ~ 3799472 (-)
AMCG00017437 NA coding upstream 419927 3907452 ~ 3908488 (-)
AMCG00017438 NA coding upstream 420988 3908513 ~ 3909212 (-)
G90255 LOC100846954 non-coding downstream 24855 3404486 ~ 3404766 (-)
G90252 NA non-coding downstream 74132 3355065 ~ 3355489 (-)
G90244 NA non-coding downstream 489478 2939935 ~ 2940143 (-)
G90243 NA non-coding downstream 490144 2939250 ~ 2939477 (-)
G90226 NA non-coding downstream 592823 2836519 ~ 2836798 (-)
G90281 NA non-coding upstream 184770 3672295 ~ 3685214 (-)
G90287 NA non-coding upstream 467363 3954888 ~ 3955136 (-)
G90289 NA non-coding upstream 554162 4041687 ~ 4041894 (-)
G90307 NA non-coding upstream 715082 4202607 ~ 4202807 (-)
G90354 NA non-coding upstream 859461 4346986 ~ 4347291 (-)
AMCG00017426 NA other downstream 587727 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 814059 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 3077835 160054 ~ 351786 (-)
G89804 NA other downstream 3323736 105685 ~ 105885 (-)
G90400 NA other upstream 1055250 4542775 ~ 4544760 (-)
G90501 NA other upstream 1670859 5158384 ~ 5221021 (-)
G90502 NA other upstream 1734948 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 2899727 6387252 ~ 6389038 (-)
G90746 NA other upstream 3245710 6733235 ~ 7188648 (-)

Expression


Co-expression Network