AMCG00017432 (ctnna2,LOC107552348,LOC103137937,LOC107706127)


Basic Information

Item Value
gene id AMCG00017432
gene name ctnna2,LOC107552348,LOC103137937,LOC107706127
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3776494 ~ 3799472 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017432
ATGTTGCAGGGCCCAGCACAGGCAGTGTGGTCCCCCGGTCTACTGGTCCCAGCGATGCTAGACTTACCAGAGGTGACCACGTTGGTGAACACTAGTAATAAAGGCCCGTCCAGTAAAAAGAAGGGACGCTCCAAGAAGGCTCATGTCCTGGCAGCCTCTGTGGAGCAGGCCACCCAGAACTTCCTGGAGAAGGGCGAGCAGATTGCCAAAGAGAGCCAGGACCTGAAGGAGGAGCTGATTGCTGCGGTGGAGGATGTCCGCAAACAAGGTGAAAGCATGAGGGTGGCGTCTTCTGAGTTTGCCGATGATCCGTGCTCCTCTGTGAAGCGTGGCACCATGGTGCGCGCCGCGCGGGCCCTGCTCTCGGCCGTGACCCGCCTGCTCATCCTGGCTGACATGGCCGATGTCATGCGGCTGCTGGCCCACCtcaaaattGTGGAGGAGGCTTTAGAAGCTGTGAAAAATGCCACCAATGAGCAGGATTTGGCTAATCGCTTCAAGGAGTTTGGAAAGGAAATGGTCAAACTGAACTATGTAGCTGCCAGAAGACAACAGGAGCTGAAGGACCCTCACTGCAGGGACGAGATGGCGGCTGCCCGAGGTGCCCTGAAAAAGAATGCCACCATGCTGTACACGGCATCCCAGGCCTACCTCCGCCACCCTGATGTAGCTGCCACCCGGGCGAACCGAGACTATGTTTTCAAGCAGGTCCAGGAGGCCATCGCTGGCATTTCTAGCGCTGCCCAAGCTACTTCTCCCGCAGACGAAAAGCACGGCCACGCAGGCATCGGAGAGCTGGCAGCTGCTCTGAACGAGTTTGACTTAGTTGGGGGCCTGTGA

Function

symbol description
ctnna2 Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2).

NR:

description
PREDICTED: catenin alpha-2-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017432 True 840 mRNA 0.58 6 3776494 3799472

Neighbor

gene id symbol gene type direction distance location
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding downstream 28651 3737813 ~ 3747843 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding downstream 237098 3529683 ~ 3539396 (-)
AMCG00017430 ctnna2 coding downstream 288969 3429621 ~ 3487525 (-)
AMCG00017425 NA coding downstream 688844 2841922 ~ 3087650 (-)
AMCG00017417 letm1 coding downstream 1210217 2528915 ~ 2566277 (-)
AMCG00017437 NA coding upstream 107980 3907452 ~ 3908488 (-)
AMCG00017438 NA coding upstream 109041 3908513 ~ 3909212 (-)
AMCG00017436 NA coding upstream 404214 4203686 ~ 4204261 (-)
AMCG00017435 NA coding upstream 442976 4242448 ~ 4270086 (-)
AMCG00017433 smox,LOC102778491 coding upstream 482012 4281484 ~ 4299779 (-)
G90281 NA non-coding downstream 91280 3672295 ~ 3685214 (-)
G90255 LOC100846954 non-coding downstream 371728 3404486 ~ 3404766 (-)
G90252 NA non-coding downstream 421005 3355065 ~ 3355489 (-)
G90244 NA non-coding downstream 836351 2939935 ~ 2940143 (-)
G90243 NA non-coding downstream 837017 2939250 ~ 2939477 (-)
G90287 NA non-coding upstream 155416 3954888 ~ 3955136 (-)
G90289 NA non-coding upstream 242215 4041687 ~ 4041894 (-)
G90307 NA non-coding upstream 403135 4202607 ~ 4202807 (-)
G90354 NA non-coding upstream 547514 4346986 ~ 4347291 (-)
G90355 NA non-coding upstream 548622 4348094 ~ 4348312 (-)
AMCG00017426 NA other downstream 934600 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1160932 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 3424708 160054 ~ 351786 (-)
G89804 NA other downstream 3670609 105685 ~ 105885 (-)
G90400 NA other upstream 743303 4542775 ~ 4544760 (-)
G90501 NA other upstream 1358912 5158384 ~ 5221021 (-)
G90502 NA other upstream 1423001 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 2587780 6387252 ~ 6389038 (-)
G90746 NA other upstream 2933763 6733235 ~ 7188648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location