AMCG00017433 (smox,LOC102778491)


Basic Information

Item Value
gene id AMCG00017433
gene name smox,LOC102778491
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4281484 ~ 4299779 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017433
GTTTGCGTCGGCACGGTGCGGATGGCCGAGGAGGCCGGGCCGCCGAGGCGCCGTGACGTCACGGGCGCTCATGTTTATGCAGCAGCAGGCGGCGACGTCGGGGAACTGGCTGCTTCTGGTTCCgacacaagaaaatacaaagcacagccggagaggagaggagaggagagcccGACACAAAGACCAGAGACGCTCAGACGCTTTATGCTCAAGACGATCGGAGCCAGTTTATCAATAACCGGTGGGACCGAGGAGCTGGTTGCATTGCAGAAGAAGAGTGTTGACGGCATGCAAAGTAGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGTGGCCTACACCGAAATCGACAGCCTCGAATAGTAGTAATCGGTGCTGGCTTGGCTGGCCTCGCAGCTACTAAAACCCTCTTGGAAAACGGCTTTACGGATGTTACGATCCTAGAGGCATCAGACCGCATTGGAGGGAGAGTGCAAACCGTTCAGCTCGGACAAGCAACCTTGGAACTTGGAGCTACCTGGATTCACGGTGCCAATGGCAATCCAGTCTTTCATCTGGCAGAAGACAATGGCCTCCTTGAGCAAACCACTGATGGGGAGCGAAGCGTGGGCCGCATCAGCCTTTACACCAAGAACGGTGTTGCCCACTACCAAACCAACAATGGCAAGAGGATCCCCAAAGACCTCGTTGAGGAATTCAGCGATTTATACAACGAGGTCTACGAGCTGACTCAGGAGTTCTTCCAGAGCGGGAAACCAGTTGGTGCTGAGAGCCAGAACAGCGTTGGAATATTCACACGTGATGTGGTGCGCAAGCGAATCATGGTTGATCCGGATGACTCGGAGGTCACAAAGAAACTCAAGCTGTCCATGCTGCAGCAGTACTTAAAGGTGGAAAGTTGTGAGAGCAGCTCCCCCAGCATGGACGAGGTGTCATTGAGTGAGTTCGGGGAGTGGACCGAGATCCCGGGCGCCCACCACGTCATCCCCAGCGGCTTCATCAAGATTGTGCAGCTGCTGGCGCTGGGCATCCCAGAGTGTGTGGTGCAGCTCAACAAGCCCATCTGCTGCATGCACTGGAACCACTCGGTGCGCCAGGAGATCACGGACACCGAGGACCACAACAGTGACCACCGCGAGTCCTCCATCCGGGGGCACCAGGTGTACGTGGAGTGCGAGGACTGCGAGTTCATCCCAGCGGACCACGTCATTGTCACCGTCTCCCTGGGGGTCCTCAAGAAAAACCACGAGAGCCTGTTCTCGCCACCGCTCCCCGCAGACAAGGTGATGTCCATTGAAAAGCTGGGCATCAGCACCACCGACAAGATCTTCCTGGAGTTCGACGAGCCCTTCTGGAGCCCCGAGTGCAACAGCATCCAGTTCGTGTGGGAGGATGAGGCCCAGCTGGAGAACCTCACCTACCCAGAGGAGCTCTGGTACAAGAAGATCTGTAGCTTCGACGTGCTGTACCCACCTGAGCGCTACGGATACATGCTCAGCGGCTGGATTTGTGGAGACGAGGCCCTGGTGATGGAGAAGTACGATGACGAGACCGTGGCCGAGACCTGTACTGAGCTCCTGCGTAAATTTACAGGGAACCAAAACATTCCAAAACCTCGGAGGATCCTACGCTCCTCCTGGGGCAGTAACCCGTACATCTACGGGTCCTACTCCTACACTCGAGTTGGCTCCAGCGGGATCGATGTCGAGAAGCTAGCCATGCCGCTGCCTTACAACGAGAGCACAAAAGCGCCACCTCTGCAGGTGTTGTTTGCTGGAGAGGCCACCCACAGGAAATATTATTCCACCACCCATGGTGCTTTGCTGTCCGGTCAGAGGGAGGCAACTCGCCTCATTGAAATGTACCAGGACTTGTACAACGTAGTAACGGCAAAGCCTAAAATGTAAAGAAGAACCACTGACTAGTGATACAATTATCTGTTCATGCATCTTTTTAATTAGTAGGGCATCTAAAGAAAAGTAATCTTGTTTTTGACTGTATTTGAATATAGAGCTCTGTAGGATTTATTTTGAGATGTACTGTAAGGCAGAAAAAGGGTGCTCCTGCatctttgttttacattttcttgagacttttgttgaaataatacatttttaacatttctatatatttcttttattttttttgtaagtgccttctgtatttaattttgtgttacaaaaaatgaacaatgaatactaataaatcacattgtatTAAGGATGCAACACTCCATTCgtgtttttagtttagttagTTCATAAGATCCACCTTAATACACAAATTCATTGCCTCCTGGTATTCAACAGAAGACTTCTTGAGAATTGGCATTCTACTAGTACTTAAGGGGGATCTGGTTTGGTTTTGTGTCTTTACATGTTGCTGTAGTTTATGAGTAAGATATGTCAAGtttatcatataagcaacttttaagaCAGTATGTATgttatttcagtgtttcagtgtttcctAGATAGCAGAAACAcaatggaaaaactaaaaaagcacCACATTTGTCTTTCCCAAAGGAACCAGTCATTACATTCAGTGGTTCACATGTGTTGCTGTGTCAAGACTGAGTTATTATATTCTCCTTTCCAGCAACAGAGGAGATGAATGCACAGTGCAATCTGCAGCGGTTGTTTTGATCGGAGTGCATTCCAACATTCGCACCGATTGAATCATCCCACTCGCCTGCATTGATTTTGTATGAATAGGGTAATGCATGGGAACATGTGTTAGCTGTGTGCTTTTCAGGTGTTCGCAAGCTAAATACTAACT

Function

symbol description
smox Predicted to enable polyamine oxidase activity. Acts upstream of or within hemopoiesis. Is expressed in several structures, including anterior axial hypoblast; blood vessel; mesoderm; nervous system; and pancreatic system. Orthologous to human SMOX (spermine oxidase).

NR:

description
PREDICTED: spermine oxidase isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K12259 SMOX, PAO5; spermine oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017433 True 2788 mRNA 0.49 8 4281484 4299779

Neighbor

gene id symbol gene type direction distance location
AMCG00017435 NA coding downstream 11398 4242448 ~ 4270086 (-)
AMCG00017436 NA coding downstream 77223 4203686 ~ 4204261 (-)
AMCG00017438 NA coding downstream 372272 3908513 ~ 3909212 (-)
AMCG00017437 NA coding downstream 372996 3907452 ~ 3908488 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding downstream 482012 3776494 ~ 3799472 (-)
AMCG00017442 fbxo41 coding upstream 111103 4410882 ~ 4439595 (-)
AMCG00017444 NA coding upstream 160740 4460519 ~ 4461277 (-)
AMCG00017440 LOC107734701 coding upstream 210640 4510419 ~ 4512209 (-)
AMCG00017441 NA coding upstream 238192 4537971 ~ 4550882 (-)
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding upstream 259126 4558905 ~ 4584957 (-)
G90307 NA non-coding downstream 78677 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 239590 4041687 ~ 4041894 (-)
G90287 NA non-coding downstream 326348 3954888 ~ 3955136 (-)
G90281 NA non-coding downstream 596270 3672295 ~ 3685214 (-)
G90255 LOC100846954 non-coding downstream 876718 3404486 ~ 3404766 (-)
G90354 NA non-coding upstream 47207 4346986 ~ 4347291 (-)
G90355 NA non-coding upstream 48315 4348094 ~ 4348312 (-)
G90345 NA non-coding upstream 84804 4384583 ~ 4390490 (-)
G90411 NA non-coding upstream 363057 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 629607 4929386 ~ 4937166 (-)
AMCG00017426 NA other downstream 1439590 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1665922 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 3929698 160054 ~ 351786 (-)
G89804 NA other downstream 4175599 105685 ~ 105885 (-)
G90400 NA other upstream 242996 4542775 ~ 4544760 (-)
G90501 NA other upstream 858605 5158384 ~ 5221021 (-)
G90502 NA other upstream 922694 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 2087473 6387252 ~ 6389038 (-)
G90746 NA other upstream 2433456 6733235 ~ 7188648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_09483465_09491174 SMOX coding CI01000049 null 9483333 ~ 9491945 (-)