AMCG00017434 (ctnna2,ctnna1,LOC107594905,LOC107750356)


Basic Information

Item Value
gene id AMCG00017434
gene name ctnna2,ctnna1,LOC107594905,LOC107750356
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3737813 ~ 3747843 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017434
ATGAGCGTGCAGGAAAGGGTCTCCTTTTCTTTGTGCCTGATGATGAACAAGATAATTTTAGATCCACTGACCTTCAGTGAGGCCCGATTCAGGCCATCTCTGGAGGAGCGCTTGGAGAGCATCATCAGTGGAGCAGCGCTGATGGCAGACTCCTCATGCACGCGTGACGACCGGCGGGAGAGGATTGTGGCCGAGTGTAATGCTGTGCGACAGGCCCTGCAGGACCTGCTAAGCGAGTACATGAATAatTTTGTGTGA

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).
ctnna2 Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2).

NR:

description
PREDICTED: catenin alpha-2 isoform X3

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017434 True 258 mRNA 0.53 3 3737813 3747843

Neighbor

gene id symbol gene type direction distance location
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding downstream 198417 3529683 ~ 3539396 (-)
AMCG00017430 ctnna2 coding downstream 250288 3429621 ~ 3487525 (-)
AMCG00017425 NA coding downstream 650163 2841922 ~ 3087650 (-)
AMCG00017417 letm1 coding downstream 1171536 2528915 ~ 2566277 (-)
AMCG00017414 NA coding downstream 1310686 2076178 ~ 2427127 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 28651 3776494 ~ 3799472 (-)
AMCG00017437 NA coding upstream 159609 3907452 ~ 3908488 (-)
AMCG00017438 NA coding upstream 160670 3908513 ~ 3909212 (-)
AMCG00017436 NA coding upstream 455843 4203686 ~ 4204261 (-)
AMCG00017435 NA coding upstream 494605 4242448 ~ 4270086 (-)
G90281 NA non-coding downstream 52599 3672295 ~ 3685214 (-)
G90255 LOC100846954 non-coding downstream 333047 3404486 ~ 3404766 (-)
G90252 NA non-coding downstream 382324 3355065 ~ 3355489 (-)
G90244 NA non-coding downstream 797670 2939935 ~ 2940143 (-)
G90243 NA non-coding downstream 798336 2939250 ~ 2939477 (-)
G90287 NA non-coding upstream 207045 3954888 ~ 3955136 (-)
G90289 NA non-coding upstream 293844 4041687 ~ 4041894 (-)
G90307 NA non-coding upstream 454764 4202607 ~ 4202807 (-)
G90354 NA non-coding upstream 599143 4346986 ~ 4347291 (-)
G90355 NA non-coding upstream 600251 4348094 ~ 4348312 (-)
AMCG00017426 NA other downstream 895919 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1122251 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 3386027 160054 ~ 351786 (-)
G89804 NA other downstream 3631928 105685 ~ 105885 (-)
G90400 NA other upstream 794932 4542775 ~ 4544760 (-)
G90501 NA other upstream 1410541 5158384 ~ 5221021 (-)
G90502 NA other upstream 1474630 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 2639409 6387252 ~ 6389038 (-)
G90746 NA other upstream 2985392 6733235 ~ 7188648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2245152 ctnna1 unknown NC_050571.1 CM025858.1 4535841 ~ 4621990 (-)