AMCG00017436


Basic Information

Item Value
gene id AMCG00017436
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4203686 ~ 4204261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017436
ATGCTTGGACTTCATAAACTTGGCATCGAGCCTAAACTGCCCCATGATGTATGCTACTTCTTGGTCAACCAGGTCTATGCTATCACTGCTTCCTTCGTGGCCTTTTACCTGCCCATGTTCATCATGCTGGTCGCCTACTGGAAGATCTACAAAGCAGCGAAAAGACAAGCCATGCAAATCAATGCAGTTGAGAACCAGATGACCATACACAATGTAGACGTTGACCCCTCCAAGAAACAGAAGCAAAGAAATTCCATGAAACGGGAGAGGAAAGCAGCTAAAACCCTTGGTATAATCATGGgagtttttctccttttctggTTGCCCTTCTTCACAACAAACATCATTGACCCATTTATAGAGTACCAAACAGACATGGTGATCTGGGATGTGTTCCTGTGGCTCGGTTATGTGAATTCCTCCTTGAACCCGTTCCTGTATGGCTTCTTCAACAGGTCCTTCAGACGGGCATTTTTCATGATAATTGGATGTAAGATTTGCTTACCTGGTTCTCCACCCAGCATTGACCTTTCTAATACCAGGAGGGATGGTAATGAACGGACAGCCAACCAATGA

Function

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0032098 regulation of appetite biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017436 True 576 mRNA 0.45 1 4203686 4204261

Neighbor

gene id symbol gene type direction distance location
AMCG00017438 NA coding downstream 294474 3908513 ~ 3909212 (-)
AMCG00017437 NA coding downstream 295198 3907452 ~ 3908488 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding downstream 404214 3776494 ~ 3799472 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding downstream 455843 3737813 ~ 3747843 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding downstream 664290 3529683 ~ 3539396 (-)
AMCG00017435 NA coding upstream 38187 4242448 ~ 4270086 (-)
AMCG00017433 smox,LOC102778491 coding upstream 77223 4281484 ~ 4299779 (-)
AMCG00017442 fbxo41 coding upstream 206621 4410882 ~ 4439595 (-)
AMCG00017444 NA coding upstream 256258 4460519 ~ 4461277 (-)
AMCG00017440 LOC107734701 coding upstream 306158 4510419 ~ 4512209 (-)
G90307 NA non-coding downstream 879 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 161792 4041687 ~ 4041894 (-)
G90287 NA non-coding downstream 248550 3954888 ~ 3955136 (-)
G90281 NA non-coding downstream 518472 3672295 ~ 3685214 (-)
G90255 LOC100846954 non-coding downstream 798920 3404486 ~ 3404766 (-)
G90354 NA non-coding upstream 142725 4346986 ~ 4347291 (-)
G90355 NA non-coding upstream 143833 4348094 ~ 4348312 (-)
G90345 NA non-coding upstream 180322 4384583 ~ 4390490 (-)
G90411 NA non-coding upstream 458575 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 725125 4929386 ~ 4937166 (-)
AMCG00017426 NA other downstream 1361792 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1588124 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 3851900 160054 ~ 351786 (-)
G89804 NA other downstream 4097801 105685 ~ 105885 (-)
G90400 NA other upstream 338514 4542775 ~ 4544760 (-)
G90501 NA other upstream 954123 5158384 ~ 5221021 (-)
G90502 NA other upstream 1018212 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 2182991 6387252 ~ 6389038 (-)
G90746 NA other upstream 2528974 6733235 ~ 7188648 (-)

Expression


Co-expression Network