AMCG00017442 (fbxo41)


Basic Information

Item Value
gene id AMCG00017442
gene name fbxo41
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4410882 ~ 4439595 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017442
ATGCTAACAAGCAGAGGAGATCAGTTCATTGAGGAGCTGCTGGACAGGGCCGACCGTGCGGAGAAGCAGCTCCAGATCATCAGCAGCTGCGGCACCACGCCCAATGGCAGCCTGGGACGCTGCAGTGTGCCCGGGTCCAAGAGCACCAGCCGGCAGagagagagaaactccaGCACTTCGGGTGTTTCCAGGGGAGTGTATCAAGTGTCAGACCGACGTTCCTCACCAAGTACTGGGGCGTCCAGCCGAGTGAAGACGGTGTCGCAGGGCTCCGGAGGCTACGACAGTGACAGCGTGGAGATGCACCCCCTGGAGGAGTGCCCCGAGGCCCAGTACTACCACGTGCAGTGCCGTCTGGGCGAGGCGGGATACGACCGAGCCGGGGTGTCACGCAGCTGGGGGCTCCGCAAACAGGCCATCCAGAACTGGCAGCGACGGCCGTACCGCAACAGCACGGAGGGGGAGGAGGGCGATGTGTCCGATGTGGGCTCCCGCACCACCGAGTCCGAGGCTGAGGTCTGGGAACAGGAGCGCCGGGCCTCGTCTGACACGCAGCACTCCAACTCCAACAAGGCCGGCGGCGGATACAGACTGGGCACAGGCCGCTCAGAGATGGGATACAAGCCTTGTCGGCATGAAAAGAACAGCCCATCCAAGTCCAACGAGGTCATCAGCCCGGAGATCCTTAAGATGCGGGCGgctttgttctgtattttcacCTACCTGGACACCAAGACCTTGCTGCGCGCTGCCGAGGTCTGTATGGACTGGAAGTTTGTGGCCCGCCACCCTGCAGTGTGGACTAGAGTGCTGCTGGAGAACGCCAGGATATCGTCCAAGTTTATGACCACTCTGGCTCAGTGGTGCACACAGACGCACTCCCTCATCTTGCAGAACCTGAAGCCGCGGCAGAGAGGGAAGAAAGAGACCAAGGAGGAGTACCTGAAAACCACACGTGGGTGTCTGGAAGTGGGGCTGGAGGCGCTCCTGAAAGCGGCAGGAGGAAACCTGTTGATCTTGAAGGTGTCGCACTGCCCCAACGTCCTGACCGACCGCTCCCTCTGGCTGGCCAGCTGCTACTGCCGCGCACTGCAAGCCGTCACTTACCGGAGTGCAACAGATCCTGTCGGCCAAGAGGTGATCTGGGCACTAGGGGCTGGATGCAGAGACATCATCTCCCTGCAGGTGGCGCCACTCCATCCATGCCAACAGCCAGCTCGGTTCAGTAACCGCTGCCTTCAGACAATTGGCCGATGCTGGCCACATCTGCGTGCCCTCGGAGTGGGAGGAGCTGGCTGTGGCATTCAGGGACTGGCATCATTATCACGGAACTGCATGCGTCTGCAGGTCCTGGAGCTGGACCACGTGAGCGAGGTCAACCAGGAGGTGGCAGCAGAGGTGTGTCGAGAGGGTCTGAAAGGCCTGGAGATGTTGGTGCTCACTTCTACGCCCGTCACTCCCAAAGCTCTCCTGCACTTCAACAGTGTGTGCCGTAACCTGAAGTCCATCGTGGTTCAGATTGGGATTGTGGATTACTTTGAAGATCCCAACAGCCCAGAGGCCAGAAAACTTTTTGACGAAATGGTGAACAAACTACAGATCACACATACTTCTGGCCGCATGCAGGAGCTCCAGAGGAACGAATGCTGTGCTGGGATCATCAACTGA

Function

symbol description
fbxo41 Orthologous to human FBXO41 (F-box protein 41).

NR:

description
PREDICTED: F-box only protein 41

GO: NA

KEGG:

id description
K10316 FBXO41; F-box protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017442 True 1668 mRNA 0.59 12 4410882 4439595

Neighbor

gene id symbol gene type direction distance location
AMCG00017433 smox,LOC102778491 coding downstream 111103 4281484 ~ 4299779 (-)
AMCG00017435 NA coding downstream 140796 4242448 ~ 4270086 (-)
AMCG00017436 NA coding downstream 206621 4203686 ~ 4204261 (-)
AMCG00017438 NA coding downstream 501670 3908513 ~ 3909212 (-)
AMCG00017437 NA coding downstream 502394 3907452 ~ 3908488 (-)
AMCG00017444 NA coding upstream 20924 4460519 ~ 4461277 (-)
AMCG00017440 LOC107734701 coding upstream 70824 4510419 ~ 4512209 (-)
AMCG00017441 NA coding upstream 98376 4537971 ~ 4550882 (-)
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding upstream 119310 4558905 ~ 4584957 (-)
AMCG00017447 LOC106608414,LOC107396729 coding upstream 161909 4601504 ~ 4620068 (-)
G90345 NA non-coding downstream 20392 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 62570 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 63591 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 208075 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 368988 4041687 ~ 4041894 (-)
G90411 NA non-coding upstream 223241 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 489791 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 816494 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 915667 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 1237304 5676899 ~ 5677249 (-)
AMCG00017426 NA other downstream 1568988 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1795320 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4059096 160054 ~ 351786 (-)
G89804 NA other downstream 4304997 105685 ~ 105885 (-)
G90400 NA other upstream 103180 4542775 ~ 4544760 (-)
G90501 NA other upstream 718789 5158384 ~ 5221021 (-)
G90502 NA other upstream 782878 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1947657 6387252 ~ 6389038 (-)
G90746 NA other upstream 2293640 6733235 ~ 7188648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000499 fbxo41 coding NC_007112.7 CM002885.2 41666611 ~ 41755499 (+)
grasscarp (Ctenopharyngodon idella) CI01000049_09561984_09598361 FBXO41 coding CI01000049 null 9561779 ~ 9598361 (-)