AMCG00017446


Basic Information

Item Value
gene id AMCG00017446
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4662625 ~ 4688223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017446
GGAAGTCCAACACAGCCCATCCTGTTTTGTGTGACGGCGATTCGGTGCGATTCACGCCAGTCTTCAGACACTATAGACAGAGGCCAGCGGTAGGCGGCGaccagttgttgttttttgttctttataaaAGACGAGAgCGCATCCAGGCGGCGCGATGCCCGCTGTGCGCCCGCAGGCCGTGAGCGCCGTGTccgcgctgctgctgctgctgctggggctgCTGTGCGCCCGGCCGGGGGACGCCAGCCCGGACAGCGGCACCGCCATCCCCGCGGAAAAACTCACTGCAGGGAGCCAGGAGCCAGCATTGGGGCTGCCCTCATTGACGGAGGCTGCTCTTAACACCGCAAGACGCAGTAGCTGA
>TU112690
CGGCGATTCGGTGCGATTCACGCCAGTCTTCAGACACTATAGACAGAGGCCAGCGGTAGGCGGCGaccagttgttgttttttgttctttataaaAGACGAGAgCGCATCCAGGCGGCGCGATGCCCGCTGTGCGCCCGCAGGCCGTGAGCGCCGTGTccgcgctgctgctgctgctgctggggctgCTGTGCGCCCGGCCGGGGGACGCCAGCCCGGACAGCGGCACCGCCATCCCCGCGGAAAGTCGTCCCTGTGTTGACTGCCATGCATTTGAATTCATGCAGAGGGCGCTACAGGACTTAAAGAAGACAGCCTTCAACCTGGACTCAAGGACTAATACCCTCCTACTAAGGGCTGAGAAGAGGGCCCTGTGTGACTGCCTGCCTGCCAACAGCCTCAGCTGAGCAGACAACCAGAAGACTCCCAGTCAGCATGGCTCTAGATCTGAACTGCAGCTAGAAACAGCCTTCATTAACAATACTCTCTATAAACGAACCCTCGAGCTGTGTCAAGAGCCTTGGAAATAACACAACACCTTGGGAAGCTAGAAGTAGTGCAGGGGTATAAAGTATACAAGTATAAAAAGTCTGTTGCTGTCAATCAGCAGATCAGTTACCAGAACCATATTAGTACCTTCTTTCAcacacttattttatatatatactgtgatgGTCAGGTGTGATATCTTTACATCTGTCCTCATTCTGACCACATGTGTTTGTTACCCTGCTCTGTTTCCCTGAGCTTTgaactttctttttcttatacAGAGTATTGTTGCATGACCATAagacaacataaatatatatcaaaacacGTCGTAGTAATAGACCCTGAAAATCCTTTGTGTAGTGCCATGTTGTGCTAATGGATGTCCCACGGCATGTTAAGCTGGACAGCAAGACCATGAATCCACAGTTTCTGCCTCACTTGTGAGTTTACCATTATATTGGCATACTAGTGACTGGAATTGAATCCAAGTAGCCCAGGAAGTAGACTATCAGACCCTGTATGCCATTGTCACATAGCTTGCAAACtagaaaatatgaatgtttgtAGAATTCCACaccttcatttgtttttgtttttttcaattatctTTTCTACTCCCTGTGAAGTTTAAGGATCACAATGATTAATGgttaatttattgtttattatattgtattaaaacacaTCTATGTCATTGGATTTTGTCCTGTAATCATTGTAACATGtcaatagtatttttattaacatttgtgcatttatatttaaaaaaggaaacccTTAACCTTGAGTTTAATATCAGTGCACCGTTTAACCACTTCTGCTATGACCTGAATTCTAGAATATCCACAAATTACAGGGCTGATTTTCAGTTTCccttaaat

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017446 False 364 mRNA 0.63 4 4662625 4688223
TU112690 True 1374 TUCP 0.44 4 4662659 4667830

Neighbor

gene id symbol gene type direction distance location
AMCG00017449 NA coding upstream 29015 4628215 ~ 4633610 (+)
AMCG00017439 rnf24,LOC107689472 coding upstream 277878 4383332 ~ 4384747 (+)
AMCG00017429 NA coding upstream 463171 4189248 ~ 4199454 (+)
AMCG00017428 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523 coding upstream 1093905 3567260 ~ 3568720 (+)
AMCG00017427 NA coding upstream 1180903 3275663 ~ 3481722 (+)
AMCG00017450 NA coding downstream 1655 4689878 ~ 4691955 (+)
AMCG00017451 NA coding downstream 173151 4861374 ~ 4868470 (+)
AMCG00017454 NA coding downstream 196738 4884961 ~ 4900663 (+)
AMCG00017457 NA coding downstream 320958 5009181 ~ 5048242 (+)
AMCG00017456 NA coding downstream 544245 5232468 ~ 5272687 (+)
G90338 NA non-coding upstream 272084 4385241 ~ 4390541 (+)
G90337 NA non-coding upstream 332042 4330370 ~ 4330583 (+)
G90333 NA non-coding upstream 350150 4312258 ~ 4312475 (+)
G90284 NA non-coding upstream 764500 3897818 ~ 3898125 (+)
G90248 NA non-coding upstream 1424899 3237445 ~ 3237726 (+)
G90413 NA non-coding downstream 9715 4697938 ~ 4710074 (+)
G90436 NA non-coding downstream 212799 4901022 ~ 4910792 (+)
G90475 LOC104962440 non-coding downstream 400370 5088593 ~ 5098887 (+)
G90477 NA non-coding downstream 403445 5091668 ~ 5222752 (+)
G90551 NA non-coding downstream 717219 5405442 ~ 5407529 (+)
AMCG00017445 NA other upstream 56054 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 1967172 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 4450689 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 4564228 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 2041515 6729738 ~ 7188643 (+)
G90877 NA other downstream 2979960 7668183 ~ 7671850 (+)
G90881 NA other downstream 3004362 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 3118155 7806378 ~ 7813639 (+)
G90955 NA other downstream 3444145 8132368 ~ 8132854 (+)

Expression


Co-expression Network