AMCG00017447 (LOC106608414,LOC107396729)


Basic Information

Item Value
gene id AMCG00017447
gene name LOC106608414,LOC107396729
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4601504 ~ 4620068 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017447
CGGAAATGGCGGACGGGTCGGCTTCGGatctggagagagggagacatgGGGGCTTAAAGAAATAATatcctgcatttatttatttttttcagtttttgtcaaCTCTGTTGTCTTCGCCATGGACCCAGAGAAGAACCTGACGTTCTGCTTAGGGCTGAATGCGGTGGAGATGACAATATCCCTGCGGGACCCCGATATTGCAATTACTAAGATGACAGTATCCCCGCAGGACCCTGATCTTGCAACCATTAACAAGGGTGTGGAGTACCAGGGCAGTGGTAGCCAACCCATCATTGCTAGCCCCAAGTACTGCCCTGGAGTCAACAACAACGCGGGCTATCTGTGCGAGACCGGCCACTGCTGTGGGGAGACGGGCTGCTGCACCTACTACTACGAGCTTTGGTGGTTCTGGCTGCTCTGGACCGTTCTCATCTTATTCAGCTGCTGCTGTGCATATCGACACCGCCGGGCAAAACTGCGCATCCAGCAGCAACAGCGACAGAGAGAGATCAATCTTATTGCTTACCACGGGGCCTGCAACTACCCTGCCTCCATGCTGGACCTAAGTTTCCTGGCCTCGTTTAAGCTGCCGTCCTATGAGGAGGTTGCAGCTCGCCCCAACACACCGCCACCTCCCTACAGCACGGTGTTTGCCCTGCAGGGGGGGCAGTATGCACATGCAGGGCCCAGTGGCATGACCTCCTCACAGAGCTCTGACAACTACACCAGCTGCTCCTGCGAGTCCTGCTCCGCCTCTTCCCCCAGCAGCACCTCCTTCTCCGTGCAGGTTACTGACGAGACCGACACCAGCAATGCCACAACGCCCAGCGAAGCAGGAGACTCCCGGCCGCCCAGTGtagccaccaccaccaccaccgccgCCATTGCCCTGTCTCCTACCACCCCTGCCGCAGATCTCACTGACCCTCTGGGGGCCTCCACGCTGGCTGAACTGCCGGACAAGGCGCCGAGCGAGGAGACCAGCAAGGAACCCCAATCCCTGAAACCAGCTCAGTCTCCCCCCAAGCATGCCCTCTTCTCCTCCAATGTGGACTTCTTCGAGCCGGAGTGCCATGTGTGCTGTGGCTCGGACATCGAAGGGGACGAAGACGCCGACGAGAGTCACTTCCGACACCGTAGGCTCACCGGGGACTCGGGCATCGAGGTGTGCCGCTGCCAGGTGGAGAGTGACGAGGAGGAGGCCGAGGAGcgggaggagacggaggggaaGGAGGCTGCCGGTTTCCTGCACGACAGCGTGGACTGTTCAAACAGAGCCCAGGCCACCCAAGCACAGCAAAATTGCCAGACCAGCAGCACGGCACCAGAGGAGTGTGCCAGTCTGTGTACCCCTGCCACAACTCTGCAGCTCAGTGGGGAGTCGGTGATCACTGTGGAGTCTGTGTGAAGTAAGAGTTGGCTGGGCTGAGCTAATCAGCCTGAAGggagataaaataaatggaaaaataacaaaaaaatgcaacatgaaTGTAGTCCAAGGCGAGGGGAAATAAATGTAAGCCCTGGTGTGGCCTGCAGGGGGGGGAAGGCAAACAAAAGCAGCCCTGCACCGTGTGCCATTGTAATTCACACGTCAATAATGAGTAACGATCCAACAATATGCACACAAAAGGAAGTTACCTGTGCTATCTAACCGGTGTGcattcaaaagcaaaatcagAAATAAGGCAAGGGGATCAAGCAACTGAAAATAAACGTGCGCCTTTTCTGgttcatttccatttgtgtatGGAGAAACAGTGTGTACAACAAAGAACAAAGGGGGTTTCAAGACCAGAAACAAAGCCGCAATGAAATGCAGCTCTTTTCTCCTAAGCTGTCCAAAGTCACACAAAGAATAATACCAGCTGAAGTCAGCATAATTTTTATACCTCCCTTTTGTTAATTCAGCTGCTCACGCATTGCTGTTCGTCCCCTTGTGTTTCTAAAAGATGTGCACTGATCTTCCTCTCTCATCCGAGCGGCGCGATTCTGCTCCTCGTCAGCAGCGGTTCTTATAATTGCTGCTTGTCTGTAACCAGCCTGGTGTAACATGAACCCACTTAGAGACTTGCATTGTTGCTCTGTAGATTACTAATGCTGCTTGAACTGCTCATCAATTCAAAGGCAATAATACGTTTGGTCCTGCCCCATAGTTTAGTGAAACTGGGGATGGGCACTGGGATTGGGGCCGTTCTTGGAAAACGTAATAACAAAGATttgaatacaacaaaaaaacatccccCCGAAAAAATAATTCCTGAATTTTCCAGAGTTCAGATGTGGAGGAACAAAGCCGAAAGGTTCTTGACAGACTTCCTTTTAGACGGACTGTTTATTTTGATGAAATGCAGGTGTGTTGAGCTTACGttcaacacacacaaatcccaGCACCATGGAGCAGTGACTAGACTGCAGCCTCACACAGGGATACTGGGAGACACCTGTCCAAAGCCACTGTTCCTCAACAGAGATGTATGATTGTAACGCTTCCTCGTCGGATTTCAAAGCTTATTTAAACCCGGAAGACAATAAGGCAGGGATAAGTACGAAGCATCTGTAAGTGTGGCCTTGCACACAGAATGCCACCTGAACTTGGTTAGATGATCCTGGCTGGTCAAATAAGCTGTGAAAGATGCACACACTACCAGGGCATTCTCTGGGTGTGAGTTATATTCGGAGTAAGTTATTCTAACCAGCAGCaggatttgattgttttctaaTAATAACATGTTGAATGCTATTGTCGATGTATAACATGAGCCAAAGCATTCTTCCTATGAAAATACACCTAGGAGAAAAAGCGCATGcagctaaaatatatataaatctatattgaggcattcattaaaattagttaggttttttttgtttgtttttttccttttaagttGCATGCATTGTCTGATATAACCACAGTACCCCAGAAATAGTTGATTTGTTTGattcaacataaaatataaaaatgcacattttatttttaagttttttcagttttttgccattttgtttattcCCGTTTTCcctaataatacaataaataaaatgtgcaatgtGAAGGTTTCGTGGGAATGTGACAGGAAGGTTTATGTCAATGAGCCTGTGgtttaaaagtgaaaaacaaacactcaacACCAACAAGAACTCTTTCTTTAATATTTCCAAGTTTAGGTTTGTCATTTTGtcctgtattgttttaattactaccacagtttttttctcaaaaagCCATGGAGGCATTCCTCTATTAAATGTCTGCAggactgatttttatttatttgtttatttatttatttaccccacagacacacacacacgctcacaatTGACAGGAAAGCTGTTGTTTCGGCAGGGTGCTCAGTCGACTAAGCCCAGGCTCTGTGGGGCTGCCTGCCACTTCTCTGCCAATGTTAGCTAGCTCTTGGCTCTTAGACCAGATAGCAAATATGTAACCCATCAGTAGCCAATTTGTAAAGCCTGATTGCTGTGCAGGTGCTCAACATAGTCCAGTGTGAGGACTGCTGCTGACTGGCCTGAATGTCTTCTGTTCGTTATTGAAATTAACCAATGACTAACACCTCACATGACTTGTTGTAAGCCTTTGTAAAGGACTTGCCTCTCGCCTTTACTTGTAGAGACTGTTCTCTTTTCATGCACATTCCACTGCCCCTATGTTAAGACACTACCACAGGGCTAGATTTGTAAAGCTTTGTTTGGCTTTGGGTGCAAGCCTGTAAGACTTATATATAATTCAGTTTGACCACTTGCATAGTCTTGTCTTACTTTAGAAATCATGGTCGTAAGATAGACTGCAGATATGTACTATTTAGCATTTAGGTAAATAAAGCAAAACGAAAAATGGCAGCAACATTCAAATCCAGAGAGTTTATTTGTATATCCATGCAGGTTTGAAAGAAATGACTTGCATTGCGGGGGAATAAATGCTTTCTTGTGGAATGAAAACCTTTATAGCCTACATGTGGTCAGCCTATACTGTGTTTAACGATGACACGACAATTACACTGtctgaagtttattttaaagtttaggAAAACTTACCATTAAATTAGAAGTCTTCAGTGCTGATCCATCGGTTCTTTGGAAATACAGTGCGATGAACATGCTTCGCTGTAAAAGCAAAGAACCCATTGTCTGGTTCTACGCACAAGATCCTGTCTAAACAATGTGCATGTAATGGCATTGAAAATCCTCATTTGcacattgtaaaaaatgtatgccAGGACAGAGCTTCCTATTGACCAAGACGATCGAATGGTGCTGCCTTGAGACTGTCACAGGATTGGTCATCACTGGCACCAGTGTGGATTGGCATTATGAAAGCCTAGGAAATCGCGTGACACAAGGCTGTTATTTCACCCTTGTTGTTTCATGTCTATCGCAGCATCAGATGTCAAGTTCTGATTAAAACGCATCTATTGTGCCCTTCACCCTCAACATACGTTAAAAGGAACTCGCTAGTGATTACGCTTGATGTACATTTCAAGAGTTTCACaagaattattttaactttCCCAAAAGCAACATGCATGCCATTATACCTCAGCTTCGCCGATTATTCCACAAGAAAGATTAAACCATTCATCACAAGAAGTTCAGGTTTGTAATTTATGCATTCcacttttttcctgtttaaaaacaCGAAACAATGAAAAAACTGGTTGTGTGgtcaatatttgtattgtatttataacacaCAAGCCTTTAAATGTCATGTCTgtgttctgtatgttttttcttataTAGTTAACTTTTTCTATTAAGCCGTTAAGGTGCACACCAGCCATTTCTGATTGGGCAGGGTATTACACTAGTCTAACACTTAGTTAATGGTTTAGTTTGAATTTCTATGGGTATGCTGTGGATTCATATACAGGAACaacccttcacacacacaatacacacatgaATACCTATCTATATGTATAAGAATCCTCCTTGTTAGATTAAGTTCAACTGTGCCATTTTAAAAGCTAATGTTATTTCTTTGAAACTGATTCAGAGATGGTGTTTCTTTTGCAAGAGCTCTGCCAAGGAACTTTCAGCGTATTCTCATTTTGGTGTCCTTCTGTTTGTTAGGCTTCTGTTAATCTTTTGCCTGGTCTAGTTATGTTGCTGTGTAATTACCAGCCTACATACTGGACATACAATAGTGAGACCTTAAAACCCTGTTTAGTGACCACTTAATATGCAAAATGGAAGATtatagaatgtatttaaaaccaacatctaatatgttttaaatgagtgGTGTGTTCTTTGGCTATTGTGGTTCATGTGTGTAACTAGCCTTGTAAATCCTCATGTACATGTGAGGGGGTTTTAGGCAGAAAGCAAAATGGATACTAGTAGACTGTTGCCTTTTATAATGCTACAATTGTTTAAGTGTAAAACAGTAATTTCCATTTTTGGTTTTACCATGGTGTGCCACTTGTCTTTTTCCATATGTATGTTCTATGTTTTCATACCTTCATATTAATGATCAAAGCTGAACACATGGATTCACCCTTGTTTTATTCCCTAAATCATTTTGcagattgttgttttgtttgagcggaaacaaaaaagaaattcaAATAGGAactacttttaaaacaaattatatatatatatatatatat

Function

NR:

description
PREDICTED: WW domain binding protein 1-like

GO: NA

KEGG:

id description
K24775 WBP1; WW domain-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017447 True 5639 mRNA 0.44 6 4601504 4620068

Neighbor

gene id symbol gene type direction distance location
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding downstream 16547 4558905 ~ 4584957 (-)
AMCG00017441 NA coding downstream 50622 4537971 ~ 4550882 (-)
AMCG00017440 LOC107734701 coding downstream 89295 4510419 ~ 4512209 (-)
AMCG00017444 NA coding downstream 140227 4460519 ~ 4461277 (-)
AMCG00017442 fbxo41 coding downstream 161909 4410882 ~ 4439595 (-)
AMCG00017448 nelfa,LOC100380775 coding upstream 23628 4643696 ~ 4661158 (-)
AMCG00017453 NA coding upstream 72065 4692133 ~ 4861977 (-)
AMCG00017452 NA coding upstream 256443 4876511 ~ 4884349 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding upstream 286746 4906814 ~ 4914079 (-)
AMCG00017460 NA coding upstream 350340 4970408 ~ 5010102 (-)
G90345 NA non-coding downstream 211014 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 253192 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 254213 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 398697 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 559610 4041687 ~ 4041894 (-)
G90411 NA non-coding upstream 42768 4662836 ~ 4665167 (-)
G90443 NA non-coding upstream 309318 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 636021 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 735194 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 1056831 5676899 ~ 5677249 (-)
G90400 NA other downstream 56744 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 1759610 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 1985942 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4249718 160054 ~ 351786 (-)
G89804 NA other downstream 4495619 105685 ~ 105885 (-)
G90501 NA other upstream 538316 5158384 ~ 5221021 (-)
G90502 NA other upstream 602405 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1767184 6387252 ~ 6389038 (-)
G90746 NA other upstream 2113167 6733235 ~ 7188648 (-)
G90749 NA other upstream 2492368 7112436 ~ 7113181 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000129_00848220_00853128 NA coding CI01000129 null 848220 ~ 853407 (+)