Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017450 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 4689878 ~ 4691955 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0030867 | rough endoplasmic reticulum membrane | cellular_component |
| GO:0031966 | mitochondrial membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0017188 | aspartate N-acetyltransferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017450 | True | 456 | mRNA | 0.45 | 2 | 4689878 | 4691955 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017449 | NA | coding | upstream | 56268 | 4628215 ~ 4633610 (+) |
| AMCG00017439 | rnf24,LOC107689472 | coding | upstream | 305131 | 4383332 ~ 4384747 (+) |
| AMCG00017429 | NA | coding | upstream | 490424 | 4189248 ~ 4199454 (+) |
| AMCG00017428 | lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523 | coding | upstream | 1121158 | 3567260 ~ 3568720 (+) |
| AMCG00017427 | NA | coding | upstream | 1208156 | 3275663 ~ 3481722 (+) |
| AMCG00017451 | NA | coding | downstream | 169419 | 4861374 ~ 4868470 (+) |
| AMCG00017454 | NA | coding | downstream | 193006 | 4884961 ~ 4900663 (+) |
| AMCG00017457 | NA | coding | downstream | 317226 | 5009181 ~ 5048242 (+) |
| AMCG00017456 | NA | coding | downstream | 540513 | 5232468 ~ 5272687 (+) |
| AMCG00017464 | NA | coding | downstream | 638801 | 5330756 ~ 5351825 (+) |
| G90338 | NA | non-coding | upstream | 299337 | 4385241 ~ 4390541 (+) |
| G90337 | NA | non-coding | upstream | 359295 | 4330370 ~ 4330583 (+) |
| G90333 | NA | non-coding | upstream | 377403 | 4312258 ~ 4312475 (+) |
| G90284 | NA | non-coding | upstream | 791753 | 3897818 ~ 3898125 (+) |
| G90248 | NA | non-coding | upstream | 1452152 | 3237445 ~ 3237726 (+) |
| G90413 | NA | non-coding | downstream | 5983 | 4697938 ~ 4710074 (+) |
| G90436 | NA | non-coding | downstream | 209067 | 4901022 ~ 4910792 (+) |
| G90475 | LOC104962440 | non-coding | downstream | 396638 | 5088593 ~ 5098887 (+) |
| G90477 | NA | non-coding | downstream | 399713 | 5091668 ~ 5222752 (+) |
| G90551 | NA | non-coding | downstream | 713487 | 5405442 ~ 5407529 (+) |
| AMCG00017446 | NA | other | upstream | 1655 | 4662625 ~ 4688223 (+) |
| AMCG00017445 | NA | other | upstream | 83307 | 4592802 ~ 4606571 (+) |
| AMCG00017422 | leprotl1,LOC103152176 | other | upstream | 1994425 | 2687420 ~ 2695453 (+) |
| AMCG00017388 | LOC108267694,LOC106608525 | other | upstream | 4477942 | 207586 ~ 211936 (+) |
| AMCG00017386 | dctn1,LOC101464740 | other | upstream | 4591481 | 48007 ~ 98397 (+) |
| AMCG00017486 | NA | other | downstream | 2037783 | 6729738 ~ 7188643 (+) |
| G90877 | NA | other | downstream | 2976228 | 7668183 ~ 7671850 (+) |
| G90881 | NA | other | downstream | 3000630 | 7692585 ~ 7693347 (+) |
| AMCG00017508 | NA | other | downstream | 3114423 | 7806378 ~ 7813639 (+) |
| G90955 | NA | other | downstream | 3440413 | 8132368 ~ 8132854 (+) |
