AMCG00017453


Basic Information

Item Value
gene id AMCG00017453
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4692133 ~ 4861977 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017453
ATGCTGCTCAGCAGCCAGCCCAGCCCCCTCTTGACGGGGTGCTCCCGGTTCATGCCGTTGTCCATCGCGGCCGAGCATGGTTCGATTTTACAGCGACACTTGTGCTGGTTCACCAGCTTGTCCAGAGAGAGGGACTCGACGAGCTCTCCCTCATACAAGGCTCCGTCGCAGTCCTGCTTATTGGCGAGCAGCAGCAAGGGCTTCCCGGCGATGCGCGGGTGTCTCAGCACCGCGGCCATGGCGGCCTTGGTCTCCTGGATGCGCGCTGCATCGCTGGAGTCCAACACGAACACCACGCCATGCACTCTGCGTAGTAGCTCTTCCAGAGGCCCCGGATGCTCTCGCCTCCGTCGAAGATCGTCACCTCAGAGTCCCCCTGCTTCAGGGCGATTTTGGAGAAGCCCACTTCCCACCATCACCAAAGTCACTTTCCTTGTGGGGTGGCTGCGGCAGTTCCCCATTGTACTGATCGAGAGTGTGTCACTGAGCGCTACTCCGAAGAATGATGTCCGGACTCTGTGCAAGAGGATCATGTCTATTCCAATAAGCGACGTGCAGCCAGAGAGCATGCAGTACAGCCTGGGTTTGAAAGCAGAGGATTCCATCTCTGGAAGTCATAGAAGTGCTTTAATGGAAGCAGAGCTGGAGTCCAGATGCACATcagcagagagaaaaaatcCTAGTCCTGCAAGGCTGCGGGCCCAGGCAACGCAGCAGGAGAGATCAGAGAAATCAGAGATTGCCTGCGACTTTGCTCAAACAATGGTCCTTGGGAGAAAAGAGGCTTCCATGAAGAGGAAGCAGACTTCCCAGCCCAGTAAGGCTAAGAAACCAAGCAAGTGGGCACCACCATTGGCTCGTAACAGCATGGACAGACCTGGGGGAGACCAGGAAATGAGCGGTGTGTCTAGAATGGTTACCAAACCCCTCCCTGCTGTTACCTCCGACCCCAAAGTGTGTGAGGCATCTATGCTGAGCCAGGTGGAGCGGGCACAGATGCTACAGGAGATGGAGCGGGCACAGGCACTGGTCCTCGCCATGGTGTATCAGGATGGCACCTCACAGCTTAGTGGAGAACagGCTTGCATTAATGTTGCTCCTTTTCACATGCGCCAGACGTCCTGTCCGTCAGTCAGTGGGTTCCTGGTGTTGTTGAAGAGTGAGCTGAATACCACAGGGATGGAAAGAGATGCACCAGACACAGCTGGCCCAGGGAGCAAGGTTGTCTACCTCAAGCTGGAGCAGAGGCCAGTGTGGGCACAGCAAGGAGAGGGGCAGGACCAGTTTATCAAAATGCTGGACCCTCAGATCGCCGCCTGGCTTCTGGACCCTGCAGACTCGGCCTCCTGCTTCCAGGACCTGTTGGCCAAACACAGCTGGCGGCCCACTGGAGTGAATCCTGAGGCTCCCATGAAGTTGAagcagctggagcaggaggCCCACCAGGCAGCAGGGCAGCAGTTCCTGGTCCTGTTTGAGAAGCTGCGCCTTCACAAGCGTTGTGAGAACAAGAAGCTGCCTAGGACTGTGCTCAAACAGCAACAGTCCACCTCGGAGGCTGCGAATTTTCAAGCCATTCCCAAACAACCTATTCAAATTACCAAGAAGCAGTACATCCAAGGGAAGGAGCCAGAAGTGGTCACTATTCACCCTCGCAGCTGGTTCATCTCAGAGGAAGGCTGGACATTCCTGTCAGCAGACTTCTCCCAGGTGGAGCTCCGCCTCTTGGCTCACCTGTCCTCGGACCCCGAACTCCTCCGTCTCTTCCAGGAGCCCCTTGCCACAGCAGATGTCTTCACCATGCTGGCTGCACAGTGGAAAGGGATTCCAGAAGGCAAACTGAAGCTGGAGGACAGAGAGCAGGCAAAGCGCATTGTGTATTCTGTAGTGTACGGTGCAGgcAAAGAACGCCTTTCTGAGATCCTAGGACTCACAGCAGAGCAGGCCAGCCAGTTTGTGGAAAGCTTTCTACAGAAATACAAAGAAGTGCGGACATTTACCCAGAAAACCATCCAGCAGTGCCAAAAACACGGTTATGTCAAGTCCATCATGGGTCGCCGACGTACTCTTCCCCACATCCAATCACTGGACTGGGTCCTCCGGAACCAGGCAGAGAGGCAGGCTGTTAACTTTGTGGTTCAAGGCTCGGCTGCGGACCTGTGCAAAATGGCCATGATCTGCATATTCTCTCACGTcgcctcctccccctctctcactgcTAGGTTGATCGCCCAGATACATGATGAGCTGCTATTTGAGGTGGAGGACTCCCAAGTTGAAGAATTTGCAGgACTTGTGGAAACAACAATGGAATCCCTGCAGCATATCGACTGTTTAGGAGTTCATCTTAAGGCGGTAGCGGTGGTAGCGGATCTGGAAGAACATCCTCTCCAGCAGCGAGTGGCTCATCCCGGGCAGCGTGTACTCCTCCGTTTCACCCACGTGCCGGAAGCCCAGCGACTCGTACAGCTTGTGGGCGGCCAGCTTCACAGCGGTGGTGCCCAGAACAATGGCGGAGTAGTTGCTGACCATGGCGAACTCCAGCACTTTGCGGCCCAGCGCCTTGGCGATGCCCTTCCCGCGctggcTATTTCAATCCTATAA

Function

GO: NA

KEGG:

id description
K16618 POLN; DNA polymerase nu

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017453 True 2604 mRNA 0.56 18 4692133 4861977

Neighbor

gene id symbol gene type direction distance location
AMCG00017448 nelfa,LOC100380775 coding downstream 30975 4643696 ~ 4661158 (-)
AMCG00017447 LOC106608414,LOC107396729 coding downstream 72065 4601504 ~ 4620068 (-)
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding downstream 107176 4558905 ~ 4584957 (-)
AMCG00017441 NA coding downstream 141251 4537971 ~ 4550882 (-)
AMCG00017440 LOC107734701 coding downstream 179924 4510419 ~ 4512209 (-)
AMCG00017452 NA coding upstream 14534 4876511 ~ 4884349 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding upstream 44837 4906814 ~ 4914079 (-)
AMCG00017460 NA coding upstream 108431 4970408 ~ 5010102 (-)
AMCG00017458 NA coding upstream 190315 5052292 ~ 5067312 (-)
AMCG00017459 NA coding upstream 346956 5208933 ~ 5209817 (-)
G90411 NA non-coding downstream 26966 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 301643 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 343821 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 344842 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 489326 4202607 ~ 4202807 (-)
G90443 NA non-coding upstream 67409 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 394112 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 493285 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 814922 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 917903 5779880 ~ 5780526 (-)
G90400 NA other downstream 147373 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 1850239 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2076571 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4340347 160054 ~ 351786 (-)
G89804 NA other downstream 4586248 105685 ~ 105885 (-)
G90501 NA other upstream 296407 5158384 ~ 5221021 (-)
G90502 NA other upstream 360496 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1525275 6387252 ~ 6389038 (-)
G90746 NA other upstream 1871258 6733235 ~ 7188648 (-)
G90749 NA other upstream 2250459 7112436 ~ 7113181 (-)

Expression


Co-expression Network