AMCG00017454


Basic Information

Item Value
gene id AMCG00017454
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4884961 ~ 4900663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017454
ATACGGACCCAGTGTCGCGTTGAATGAAGATGGAGGAATGAAACGAATATTTGGGAACTAAGagtggtttaattaaatgagCTTGAACCAAGGCACCTCGTTAAGCGACAAACCTCAAAGTTTACTGGCATGGTGTAGAAATACAGGAGAACGAGTCATTTCTGTGTAGCGTTCCGGACACAGGAGGAACAATGGTGAAATACTTCTTCAGTGAGACGGAGATCAAGAGCGCATGGGACCAGGTTTTTACTGCTTTCTGGCAGAGATATCCCAACCCTTTCAGACGCCTCCTGATAAAGACCAATCGCCTGCCTCGCTGGGCAGAGAGGTTCTTCCCCTCCAACCTGGCACGGTGCGTCTACATCATGGAGGACTCAGTGGTGGATCCCCGCAGTCGCACTCTCACCACCTTCACATGTAATATCAACCATGCAACCCTCATGGTGGTGAAGGAGCAGTGTGTGTACAGCCAGGACCAGGAGCGGCCCACCTGCACACACCTCACACGAGAGGCCTGGATCTCCTCTGGTGTGTTCGGCTTCTCCAGGGCCATTCAGGAGTTTGGACTGGCCAGATTCAAGAGCAACCAGGTGAAAGCCATGAAGGGCCTGGAATACGCACTATCTAACTTGCACGGAGAAGGATCCTCCTGGACTCCCAAGGACAAAACCAAGGATGCCACCGTGAAAGCTAAAGAGACTGCGCTGGCAGCCACAGAAAAGGCCAAGACCCTGGCCACTGCAGGTGCCCCCCAGAAACCCAACCAGTTTGTGTGACATCTGCCCACACTGATGGAGGGGAACTTCGCGGACACACGGACGGACTCGTGTGTAGAAGAACTGATATCTATACCTGCACTTAGGTTAAAAAAGGCTAAATAGTCGATTTCTTTGGACTGGCAACAACATATCCTTATTAGTCAATGATCTGTGGCTTGTTATCTGCTGTCTATTTAAGCCAGTAATTGTGGCTCGATGTATCTAACTCTGTTCTGACTGTATCCAGGTCCAGTAGAGTCACTGAGGTTTCTGTACCCCTGCTGTAGCTAAAGATTTTAATGCAGCCTTTAACTCTCAGgtacttttaatattatgcatatgaaatgcaaaatgtatatatacaaacactgtATAAACTTGTGCATACGTCATCTCCttcatgttttttaatctaataatagtttgtttttgtatatgtaGACCTATATAGTCGTCGGGACTCTTTTCAcatcaaatattttgaaaaatcatCCACTTATTGCACAAACTAAGTGAAGGGATAAAACTGAACTGTTTATAAGTGACCTATTTTCAAATCAAGTGTTGTGTAAGGCGTGTGAGGATCTTCATCAATGACTGAAGaccattttaacactttcattgtatttatactttaaattatttgaatcaACCACTGaaaatgtggattttaaagaactatttttcagttttttaaagacTGAATTAAAACCTTACGGCATTCCTTTCCAACTGCATAACCTTTATGAAAAAGATTACAATGTGAAGAGAATACTGGTGAGTTTACAGCAAAGAGTGGAAGATGTGGGAGGTATTAGTCGTTGTTAGTTGTTGAGGATAGAATATCAGTGGTGAGTAGCAAAACACTGCAAAGCTAATGTGACCATGGGATCATGCCATTTGTAAGATTGCCTCCTGTTCTGATCAACCAATGTCATATGAAGCTAATTCTCTCTGTACAAAGCGGGCAGGTTGGGGTGCAATGCAGTGGGCTCTGCTGCATTGCAGTCTTTGCACAGGGATTTTCCAGATTTCAAGATGCACTTCTGCCCCTGAACTGTAATAGCACTACTTAAGGAGGACTAGATTCCTGATAATGTGCAGGTTTGATTATTTTCAGAACTGTggaaataacatacattttgttcCTTCTTTCTGATGTTGTGGCCAAACTTATTCTGCCGCACTGGAATACTGGAGTTGTTCAGCAAATGTGGGACGTGCAGCACGGCAGCTGCTGGCTTCAGGCAaactgggagggagggagggaggatcTGAATGTCAGGATATCTGCGTCAtacttctgtctctctcttttaatacttttttatattgaaatatgtcTAACTCTGTGTGAAAGTTTGCTATACTTAATAAAGTGGCTCAGTACTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017454 True 2152 mRNA 0.43 6 4884961 4900663

Neighbor

gene id symbol gene type direction distance location
AMCG00017451 NA coding upstream 16491 4861374 ~ 4868470 (+)
AMCG00017450 NA coding upstream 193006 4689878 ~ 4691955 (+)
AMCG00017449 NA coding upstream 251351 4628215 ~ 4633610 (+)
AMCG00017439 rnf24,LOC107689472 coding upstream 500214 4383332 ~ 4384747 (+)
AMCG00017429 NA coding upstream 685507 4189248 ~ 4199454 (+)
AMCG00017457 NA coding downstream 108518 5009181 ~ 5048242 (+)
AMCG00017456 NA coding downstream 331805 5232468 ~ 5272687 (+)
AMCG00017464 NA coding downstream 430093 5330756 ~ 5351825 (+)
AMCG00017463 NA coding downstream 455099 5355762 ~ 5370642 (+)
AMCG00017462 NA coding downstream 472694 5373357 ~ 5375454 (+)
G90413 NA non-coding upstream 174887 4697938 ~ 4710074 (+)
G90338 NA non-coding upstream 494420 4385241 ~ 4390541 (+)
G90337 NA non-coding upstream 554378 4330370 ~ 4330583 (+)
G90333 NA non-coding upstream 572486 4312258 ~ 4312475 (+)
G90284 NA non-coding upstream 986836 3897818 ~ 3898125 (+)
G90436 NA non-coding downstream 359 4901022 ~ 4910792 (+)
G90475 LOC104962440 non-coding downstream 187930 5088593 ~ 5098887 (+)
G90477 NA non-coding downstream 191005 5091668 ~ 5222752 (+)
G90551 NA non-coding downstream 504779 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 506985 5407648 ~ 5412689 (+)
AMCG00017446 NA other upstream 196738 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 278390 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2189508 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 4673025 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 4786564 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1829075 6729738 ~ 7188643 (+)
G90877 NA other downstream 2767520 7668183 ~ 7671850 (+)
G90881 NA other downstream 2791922 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2905715 7806378 ~ 7813639 (+)
G90955 NA other downstream 3231705 8132368 ~ 8132854 (+)

Expression


Co-expression Network