AMCG00017456


Basic Information

Item Value
gene id AMCG00017456
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5232468 ~ 5272687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017456
CTGGGCTCGGTGAGGAAAAGGAGACCGAGAATGAGGAcaaggagagggagaaacagGCAGGGATCAGCAAGCCAAAGTCGGAGAAAAGCAGCAGCCCCTCAGAGGTGACAGAAACGTTGGGTTTTTATGAAAGGAAAGCTGTCAAGCAGGAGAAAAAGCGAAGTCTGTCAGaccTTTCGTTGCTGAGGTTCATTAGTGCTGAGCTGACAAGGGGATACTTTCTGGAACACAATGAAGCAAAGTACACagagcggagagagagagtttacaCATGTATGCGGATTCCCAGAGAGCTGGAAAAGCTGATGTTTTTCGGGTTCTTTCTGTGCCTGGATGCCTTTTTATATGTCTTCACTCTCCTCCCTCTGCGAGTGATCCTGGCTCTCATCCGGCTCCTCACCCTGCCTTGCTGTGGACTGAAGGCAAATACATGCCCAttctgcaaaaagaaacaaaatagcaGtggcACTCGCTTGTTGCAGCCTGCCCAGGTTTGCGATGTCTTAAAGGGTTTTATAATGGTCATCTGCTACTTCATGATGCACTACGTAGACTACTCCATGATGTACCACTTAATCAGAGGGCAATCTGTCATCAAGCTCTACATCATCTACAACATGCTGGAGGTAGCCGATCGATTGTTCTCGTCCTTTGGGCAGGATATTTTGGATGCTTTGTACTGGACTGCAACAGAGCCGAAGGAGAAAAAGCGAGCACACATTGGTGTAATACCGCATTTCTTCATGGCGGTACTTTATGTGTTTCTACATGCTATTCTTATAATGGTCCAAGCAACAACGCTCAACGTAGCCTTTAACTCTCATAACAAGTCATTGCTCACCATCATGATGTCAAACAATTTTGTGGAAATCAAAGGGAGTGTTTTCAAGAAATTTGAGAAAAACAATCTCTTTCAGATGTCAAATAGTGatattAAAGAGAGATTTACAAACTACATACTATTGCTCATAGTGTGTCTAAGGAACATGGAACAGTTCTCATGGAACCCAGGTAAACTTTAAAATCTTTCCTGATGGATGAGAATCCTTTTTTAGattgtcattgttttaatgaaaaatatcaaaattgttaaaaaatgttacttATATTTTGTCTTCCAGGTGTACAGTGAATACAGAGCCAGCCTTGCTTTTGACCTTGTAAGCAGTCGGCAAAAAAACGCATACACAGATTACAGTGACTCCGTGTCCAGAAGAATGGGGTTTATTCCTCTTCCTCTTGCGGTGCTTCTAACAAGAGTTGTGACTAGTTCTGTGAAGGTCCAGGGTTCCCTTGCCCTTGTGTGTGCACTGTTGTTCTATTTGGGGATGATAACACTCAAAGTGTTGAACAGTATAGTGTTGCTGGGGAAGTCTTGTTTATATGTGAAAGAGGCCAAGATGGAGGAAAAGTTGTTTCAGAATCAACCAGCTGCAACACCTGGGAAACAAGCCAGCAAGTCAAAGAACAAATTCTCAGCCCCACCAgGCGATCCAGGAGACGAGAGTCTTTCTGCATCTATCACCAGCCAACCAGTTCACCAGTCTGAAACCCCTTCACCTCTGCTCCCAAATAGTAACTCTGATCAGTTCCTCACCACTCCAGATGCTGAGGAGAAGGACATCGCGCAAGACAGATCAGAGCTCAAGCACAGAGCGTCAAAGAAGGATCTGTTGGAAATTGATAGGTTCACAATATGCGGAAACCGGATTGACTAATCTTTTCAGCTTTCCCCATTGAAACTGCTCAGGAGTTACAGCATGGCAAACGGTATACTGCCAACAAGAACATCCTTCGCCAAAGAGTGGCACTAgagtatttattgaaatacaaataatttattgttGACTGGAAGAATTATTTTTaggtccttttttctttttttctctcccctaaTCTGAATGGTAACCCTGCCACGACATAACGTCTGAGTCACTCGGGATGCAGTGTCAGAAAACATTTGCTCTGTCCACTTCAACTGTGGAGCTGACTGGACTGGAGAGGAGCGCTGCTTCGTGTCAAAGAGCTGGTGGCACAGGCAGCCTGAAGGATCGAGGTGGCCACGCTGCATCGACTCAAAtcgaaaacaaaacacaacaatgcaCTGTTATTCAAAAGGCCTTCGATATAGAAGGATGTGCCTATGACACTGCAAGAATAATCCATTGCATTATAACTCTTCTTTTTTTACTGGAGAGTTAAAGACTACGCAGTGGTGCGGACTTCGATTcagcataaatacattttcctgtcCCCCCTGCGTCACAGTACAGTAGGTCATTGAAAACATCAGCTGTTAACAACCCTGTCTTCTTTAACAATCCTATTCCAATTTTGCCAATTCAAAAAAGAGCTCTAATGGCATTACTGACATTGATTTATAACAAGGTTTCCTCAGTTGCATTTGACCTTTCAGAGTGTCTATTGAATAAAATGATCTGCGGATTAATTTGAATGTAGTAAGGACACAACTCTGGTTGCTCATGTAAGATTGCCATACgctttgatgtttgtttgtttttgcttgtttttttacataattcaaAGGATATGAAGTAGAATTaggtaaaacattttgttttccagtgaaTGCCGGTACACAGTAGATGGCAATTCATTCTGCGGTTGCTGTGTACTTCTGTGCTCCCATATATAGTATGCCTTGTTGAGAAAACCCTGTTCGATCATAGAAAGGGTATTGCGGAGAATGTCATAATACAAATGCCTGTACTTTATAGCAGGCAGCTTTTTTAGATGCACTTTTCTTTAGGCCTGGCATTTGTCTTGGTTTTGCTTagtttttttggagggggggttctttgttgttgttttggggtGTTTTTTGCACTAATTTACCATACTGTCTTAAGCTTCATCTTTTGCAACAGTAATATCCATTCTTCGCAAGTGCTTAGAAATAACTGAGCTAACACGGTATTTAAACTGTGTTATGACTATGCCCAGATCATTAAAATTGTTAACTAAGGAAACTCTTGAAATATTGGAATGTCTCAAAaatgcttatatatttatattattataagtacTGACCAGCATTGAATAAACACCTTTTGTGTGAAGTTGTTTAGTAGTCTTTTAGATGTTGACTTGTGCTCTCTGAAGTCTactgggaaaaaaagaaaaccattaacAAAGCTTCTAGAATGCCAAATATGTAGTAAGTATTTTGCTTAGCCTACAGCTTAGAGTTATCTCATTCCCAATATATTACaacaaattattcttattaaattCACTCCAGTTTGATTAACtcagaaactatttaaaataatttggattGCACACTATATTGTGTAAAACTAGTTGAATATCAAATATTTCCTCTAAGCTTAATTTCAacagaaatagtttttattgaataaaaGGCATAGTATCCACATAAGTCCATCTGGATTTTTCTTGGTGAgatatttaataacaaaaaatagattaaaatgtaatataaacatttcCATACCAGCTTTCCACTCTTTATCTGATGTCACACATTTGCAATACATTCATCATGGAATTATGAAGATATCCTGTATTTTGAGAACGCTGAACTATAGTATTTTAGCGAGTTGGATGGTACAGTGGATAGTATTTTGTGCATGGAATCCAGTAgtgaatacaaacatttttgtacACTTTAAGAATATCTTTGTAATGTGTTGTAAACAAAATCAGTAATGGTtgaaataatttcatttttcatgtttaaaatacaagaaTCTGTACCTTTGTAAGAAATGCATCTCATTGGGGGGTGATGAATAAAAGTCTTTTGTaactttgtgttatttattttttaattttcttcgaTTCATGTTAACAGTGTGCAATATGCTTTTGTATTCATGGCACATAAGAGTTGTGTTCTTACTGTACTGCAGTCACATTGTGCATTCAATCTGAACACTATTTGAAATGTGGATGACACAATTTCAgatgtacatttttacacatgTACAGAGATGTACATTTTTACCAGTGTGAACAATAAAAGGTCAGCAGCTGTGAATTAGATGAAGTGTGGCAATAATACACCTGAACGGCCTTCGTTTTGAATTTCAGTTCTCAGTCAGGTGAGTCTCGGCCGTGCAGGTGTGAGGGCAGATGAAACACGGGCAATCTGAACAGTACAGTCAGAATGAATTTGCTGATGTTTGCAAAGCCTTTTGACACATCAGTGAACGGCTGGACGCTGTCAatcagaaagaaatgcagacaaAGCTTTTTTATTAAGGGCTGAACTGCTAGAATTAATCTTGACCCATCACTATCTTAAAGTCATTGTAGAACATTGATTTCCCAggattctctctttttttcttcttttaaccACCTTTGCCATTCTGTTATTCAGGAATGTACCAGGTAACTGCCCACACCATTTCTTCTAGCCTTACTTTCCCAGTCTTGTGATCATGGTGTGCTGACTGTGTCTAACTTTAGACTGAAGTCTCGTGGTTTCAGGACATTTCTTGCCTTTCTGAATGTTTTTGGTAAGTGCAATAAAGCTTTTCATTCAGGTTTTGAA

Function

GO: NA

KEGG:

id description
K23404 TAPT1; transmembrane anterior posterior transformation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017456 True 4543 mRNA 0.39 14 5232468 5272687

Neighbor

gene id symbol gene type direction distance location
AMCG00017457 NA coding upstream 184226 5009181 ~ 5048242 (+)
AMCG00017454 NA coding upstream 331805 4884961 ~ 4900663 (+)
AMCG00017451 NA coding upstream 363998 4861374 ~ 4868470 (+)
AMCG00017450 NA coding upstream 540513 4689878 ~ 4691955 (+)
AMCG00017449 NA coding upstream 598858 4628215 ~ 4633610 (+)
AMCG00017464 NA coding downstream 58069 5330756 ~ 5351825 (+)
AMCG00017463 NA coding downstream 83075 5355762 ~ 5370642 (+)
AMCG00017462 NA coding downstream 100670 5373357 ~ 5375454 (+)
AMCG00017465 NA coding downstream 105772 5378459 ~ 5379148 (+)
AMCG00017461 exosc9,LOC107746036,LOC101063486 coding downstream 152744 5425431 ~ 5459702 (+)
G90477 NA non-coding upstream 9716 5091668 ~ 5222752 (+)
G90475 LOC104962440 non-coding upstream 133581 5088593 ~ 5098887 (+)
G90436 NA non-coding upstream 321676 4901022 ~ 4910792 (+)
G90413 NA non-coding upstream 522394 4697938 ~ 4710074 (+)
G90338 NA non-coding upstream 841927 4385241 ~ 4390541 (+)
G90551 NA non-coding downstream 132755 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 134961 5407648 ~ 5412689 (+)
G90554 NA non-coding downstream 139044 5411731 ~ 5412261 (+)
G90561 NA non-coding downstream 167525 5440212 ~ 5463064 (+)
G90647 NA non-coding downstream 404214 5676901 ~ 5677244 (+)
AMCG00017446 NA other upstream 544245 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 625897 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2537015 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 5020532 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 5134071 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1457051 6729738 ~ 7188643 (+)
G90877 NA other downstream 2395496 7668183 ~ 7671850 (+)
G90881 NA other downstream 2419898 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2533691 7806378 ~ 7813639 (+)
G90955 NA other downstream 2859681 8132368 ~ 8132854 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001215 tapt1b coding NC_007112.7 CM002885.2 22770255 ~ 22803147 (-)