AMCG00017457


Basic Information

Item Value
gene id AMCG00017457
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5009181 ~ 5048242 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017457
AGCGAAACTACGCGCGTCCAGCAGCGCCGCTGACGGCTCTGCACAGCGCATGTGCAGCAGCTACAACAGGGATTGACCGCCCGgctgtctcctctctctgaTCAAACACGGCAAACGCGGGTTCGGGATACAAATACAACCCTTCAAAACTGGATTGGTTGGCTTAACTAAAAAGCCCCTTCTCTTCAGTGGTTCACAGTGCTTTCGTTCAGTATCCCTCCCCCTCATCACGCCCGTCCCTGTTTTTATTGAAGCCCAGGCTGTGCGAGGAGCGGCGGCGGAGCGGCGCGCAGGGACCCGCAGCCAGACAGAAATGGAGACGAGCAATAGCTCTAGAATATTTGGAATCCTTCAGGATTTTCGACTGCAGAAATACTACAATGGCTTTCTGGAACTGGGAGTCATAGATGAGAGAGATTTTTTGGACAGTATTTCACAGCAGAATTTAAATGACCTAGAGCTAAGCCCTTCGGAGAATACCATTGAGGATCTCATAATGAGAGTTTATCTGAAAGAGAATATCAGCCCTGAGCAGACTGTGTGTTTATACACCCATGATGGCATTCCCTTGACAGATGACCCTTTCTTCAACAAATGGAGCCTGAGTGATCGCCACATTGCAAACGGAGAGCAGCTGTACGCCATCTTCACCCTGAAGGAGAATGTCAGCCTGAGTCCCACTTTACCACCTGACCAGACTGCTGACCCCAGCCTGGGTCAACACACCTTGCACTGCCATGTGATGCTCCGAGAAGGTTGGACAGACAATTCAGTACTGGAAAGCCTGGGCCTCTCTGACCAGTCAgaggtccatgtgtccctgtcCTTATTCCCGCTCTTTGATATGGGCTTTGCTGAAGCCAACTTCATTGCTGATGTTAGGCCCATCATGCAACAGAGTGAGAAGGGCATCAGCATCTTCTATTCCTCTCTCTATTCAGTGGCCTCCAAGTGTCGCGGGCAGCAGGGCTGCAAGCTTATAGCGCTGCTCCGCCAGCTTACAGGTTGCCACCCCCTGGCCCAGGCCCTCTACCAGGTCATCTGCAGAAATGATTGTGTGAGCAAAGCACAGAAGAGTGGAGGCGCTGATAGGGAGCAGTACGCTACGCTGTCCCTGTTATGTGCGGGATCGCAGCAGCATCTCACTGAGCCAGTGCGCGTTCCTGGACTGCCCACTGTGTTTGAGCGCAGATATATCATCAAACAAATCAAAGAGGACAAAAGAATTCCTGGGTGTTCTGAACAGAACCTGAGCACCCTGAGCCTGCAGCGAGCCAGCGATTTGGAGCGGGTCTTACTGTGCCTGCCTCTCTCAAGGAGGTCCTTCCCACAGTGGGTAACAGATCCTGATGCTTCATCTTATGGGAACTTCCATTCTGTCTCCAAGAAATCATACAGTGACATGTACTCTGCTCTTAAAGAGACCCATTATCTTCAGATCACCCCCCCTCTGGTCCTGAAGGGCCTGGGGCTCACTGGGCCATTGCTGGTGTTCCTTGAGAAAgATCATCTTGGAGTTTATACAGGAAGACATAAAATGGATGCAAACAATGTAATTGTGTTTGATGTTCAGAATGGGAAGACAAGGACTGTGGATGTGGACATGCTGGCTGCCAAGTTACAGGATAAGAGAGAGACCCTGACATCAATCAACACCACACGTATACCAGTGGAAGCCATACTTGTGCTACTGGACTGCAGCTTGTCCATGGAGGAGGGACGATTTGAAGCTGTCAGTACCCTGTCTCGCTTGGATGCAGTGAAGGTTCTATTTGAGGCCTTTGCCAACAGGACCATGGCCTACAACTTTCACCATATTGTTGGGCTGGTGACATTTGGAGGAAATGCAGATGTTAAACGTATACACACATTCACTGAGAACCTGGAACACTTTAagGAGTTTGTCTCAAGCATAAGGGCGTCAGGGTGCACTCCGCTGTACGATGCCCTGGAGCGAGGGCTCCGAGAGCTAGAGGAGGTTCGTTCCAGTTTCCCTGACTGCAGGCTCCGCATGCTGTGTCTCACTGATGGAGATGATGTAGGCTCTGACAGCAACCCAACGAGGACAGTGAATAAGCTGCAGGAGGCTGGCATTGTGGTGGACGCCATTATTATTGGCAGCGTTAATAACCCTGTGCTGCATGGCATCAGCAATGTCACTGgCGGTTGCTGCTTTAAGCCAGAAACTCTTTCAGAGGCTCTGAAGCTGTTTGAAATGGAAACCGTTTTATCACTGAACAGCCGTAATGTAAAACCAAGCCATCCTGAAGGGTCCATCAAGAGATTGGCAGACTTAAAGAAAATCTTTGCAACTCGTGGGTATGATTTTGAGCCAGAGAAGAAGGTGCCTTTGGAAGTCCAAAGCAAAGTTGCTCCTGCATACAAGGTTTTCAGCAGGAAGTCCAAAGAGCACAAGGCAGTGAAAGAGCAGAATGTGTCTTTGCTGCGTGAGAAGAGGATTCTGGAGGAGATACGAGAGTTGCACCTCTCCCCTCACCCCTACTGCCGAGTTTACCCCTGTGAGAGCAACATAGCTTTCTGGCAGATCCTCATGATGGGGCCGTCAGAAACCCCCTATGAGAATGGAGTTTTCCTCCTGTACTGTCACGTGGGACGTATCTGCCACAACATCTTTGACAGGAACTATTCGGCCCATGTGACTGTGAAGCAGATCCTAGATGCGGTGTTTGGCCTTCTCATCACACCAGAGCCAGAGGACCCACTGGACAGCATACTGGCTGAACAGTACATGATGGCCAGAGAGGAGTACCTGGAAGAGGCAAAGAAGAGAGCAGCTGATGAAGCCAGCCCAACTCTGGAGGACATGGAGAAGAAGTTACTGGGCTCTGACCTGGATGATAACCCAGGTCCAGCCCACCTGGTCTGCCGCCTGTCCAGACAGATGTTTGTCGATCCTGTGGGGACCTGGTATGGAGACGTCTATGAGCGCAGGGCCATTGAGAAACACCTGAAGACAGAGCACAGGGACCCTTTCTCAGGAAAACCTCTGGACATGAGCTGCCTTAGACCTGACCACAACATGAAGAGAATGGTGGATGCCTTCCGCATGCATCAGATGGAGGACGACTCCGTGTGAACTAGACTGGACCACTGCTTACTGTGACGCTGTAACCGTCTGagattgtaaaacaaaacaaagtttaccATATAAATGCACTTTATTGATGTCCATAGCCACTCTCACATCTTTATGAGAGGAATCATAAAACAGGATCTCgagtctgttttcattttattccagtgGAGCCCAGAAGTCTGTTTATCATTAGAACTTAATAATACATGGAGAAGTAACCACAAATGCATGACATTCTCAAAACATACATCTTAAAAGCTAGTTGTTTAGCCTTCAATGCTGAAGTCTCTGTAGTGTTGAGTTGTATTATTGTAGtagttataaatatttattggttTTGAGTCTTTTACAGTCGAGAGTTTCCCTAATAagttgaacaaaaaaaaatcaccaatgTGTTTTAAGGTTCTTAGAGTTACACccttaaatgcatgtatttaaatgcaatttaatgtaattgatattaAGGTACATTTGTGAGAAACTGTCATTACAGGTGTAggaattctgtattttataggGTTGAAATGGAAAGatctcccttttctttttctgaaatgttaaatgttatttactCGACTCCCTGTCCTGGATCTCCAGGCCCAATTGGTTTAGGACTAATTATCTATGTGGTATATTATGCTTTACCTTGGTGTGTCTGGTTCCCaagggaaaaagaggagattgTTACATGCACCAAAACCTTGAATGGGATTGTATACAAGCTGTACAGACAGGTATATTTGAGAATCACCTAGTCTTTGTATGCAATTGCTTTACAAACTCTTTTCATTCTAATTGAgcatttaataaatgtgattgTATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017457 True 3926 mRNA 0.47 23 5009181 5048242

Neighbor

gene id symbol gene type direction distance location
AMCG00017454 NA coding upstream 108518 4884961 ~ 4900663 (+)
AMCG00017451 NA coding upstream 140711 4861374 ~ 4868470 (+)
AMCG00017450 NA coding upstream 317226 4689878 ~ 4691955 (+)
AMCG00017449 NA coding upstream 375571 4628215 ~ 4633610 (+)
AMCG00017439 rnf24,LOC107689472 coding upstream 624434 4383332 ~ 4384747 (+)
AMCG00017456 NA coding downstream 184226 5232468 ~ 5272687 (+)
AMCG00017464 NA coding downstream 282514 5330756 ~ 5351825 (+)
AMCG00017463 NA coding downstream 307520 5355762 ~ 5370642 (+)
AMCG00017462 NA coding downstream 325115 5373357 ~ 5375454 (+)
AMCG00017465 NA coding downstream 330217 5378459 ~ 5379148 (+)
G90436 NA non-coding upstream 98389 4901022 ~ 4910792 (+)
G90413 NA non-coding upstream 299107 4697938 ~ 4710074 (+)
G90338 NA non-coding upstream 618640 4385241 ~ 4390541 (+)
G90337 NA non-coding upstream 678598 4330370 ~ 4330583 (+)
G90333 NA non-coding upstream 696706 4312258 ~ 4312475 (+)
G90475 LOC104962440 non-coding downstream 40351 5088593 ~ 5098887 (+)
G90477 NA non-coding downstream 43426 5091668 ~ 5222752 (+)
G90551 NA non-coding downstream 357200 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 359406 5407648 ~ 5412689 (+)
G90554 NA non-coding downstream 363489 5411731 ~ 5412261 (+)
AMCG00017446 NA other upstream 320958 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 402610 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2313728 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 4797245 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 4910784 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1681496 6729738 ~ 7188643 (+)
G90877 NA other downstream 2619941 7668183 ~ 7671850 (+)
G90881 NA other downstream 2644343 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2758136 7806378 ~ 7813639 (+)
G90955 NA other downstream 3084126 8132368 ~ 8132854 (+)

Expression


Co-expression Network