AMCG00017458


Basic Information

Item Value
gene id AMCG00017458
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5052292 ~ 5067312 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017458
CGTCAAGGTCAGCCAGCTGGGGAGTTGCTTAAGAGATTAAAAAGcgttaaagaaaatgtaatattaaaaacgTGTTTTGTAGTCCTCTGCATTAAAGGAACCCTCTAACTAACTAAAGAATCTGATATTTTAACTGGGACATGGAAGCAATGCTACAGTAATTGTGCTGTTGTTGGATTAGAGTATCTTGGTTGCAATCTGCTGGATTGGGTGAAGTATGAAGTGCGTAAATCAGGATCAAGCTCGTCGTCTTCTCCACAACAAGTTTGTTGTAGTTCTTGGAGACTCCATTCAGCGGTCAGTTTATAAGGACCTTGTGGTATTGTTACAGAGAGACAGCTATCTTTCAGTGGCTCAGCTCAAATGTAAGGGGGAACTCAATTTTGAACAGGACTGCTTGGTGGAAGGTGGGAAGATGGGCCAAATGACAAACGGGACAGAGTACAAGGAGGTACGGCAGTTTCGAACCCCCCATCATCTGGTGCGCTTCTACTTCCTCACTCAAATTTACTCCAACTACATGGAGAGCATCCTGTCAGACTTCAAGGCGGGGCCACAGCCAGATGTGCTTGTAGTCAACTCTTGTGTGTGGGATGTGTCCAGGTATGGAGGCAACTCGATGACTGACTACAGAGAGAATCTCAATATGTTTTTCATCCAgctgaaaaaaacacttctccCAGAGTGTCTTGTTATATGGAACATGACCATGCCTCTTGGGATGAAGATTACTGGTGGCTTCCTTGTACCTGAGATCCAGCACCTGGGACAGTCACTGCGCATGGACATTATTGAAGCCAATTTCTACAGTGCCACCCTGGCGGACTCATTCGGTTTTGATGTGCTGGACCTGCACTACCACTTCCGCTTCAGCCTGCAGCACCGCATGAGGGATGGGGTACACTGGAACCAGCTGGCCCATCGGCGTATCAGCTTCTTACTGCTGGAGCACATCGCTGAGGCCTGGGGCGTGGAGCTGCCCGACAGCCAACTCCCCAACAATTCTGGTTACGGCGAGAACACTGGGGTTGCGTTTCATCATAGTGGCACCAGAGATGGTTTCCAGCCTCGACTAAACCGTGGACCTGCTGCAGGCTACTGGAATCTGAATGGGAGATTGGGGCCTCCTCTTATGAACTCCTACAACGAACCCCCAAGGATAAATGCCCCTAACTACAGTGGCCTCTGCAGGAATCACAATCGGTGGCTCAGGCCCTACAGCATGGATCCATACATGCAGTCCCCTGTGATGAATTTCAATGTCTCTGgACAACCGCGGCAACCGACCTGCAGATATCAAAATCCCCCGTATAGGTATGGCAGCTGTAACACAGCGACCATGTTCAATCCCTTTTTCCACAATGATTCTCCGCTCATTGGCACAACTTCAAACCCCCGTGTAATTGATGGCTACATCAGCTTCGAGGAGAACAACAAGATAAGAATGAAACCTCCAGGTGCAAATTAcgatggggtgccaacttctaACGCAAACCAATGGAGACCCTCTGGCAGTAATTTTGTGATGAGGCAGCGACCCGCAAAGAGGTTCTACGCTCCCTACAACCGATACAGCCATCATCCCAACTACAGATACTGAAGCTACAGAGATCTCCTGGCAGACTCTTTAGCAGTATTGGatttttatacatattgtagttttttttctttttttgtctatGCTAATACATCCATCTTTTTATTGCAAGAGTTCCCTTGATGGTTGTCTTGCTGAACTTCTTTTGTTTCAGTGAAACATGCtgagcattttatttatatatagttatatatgtaTCAGCATTTACCGTTTTAATAGttgtaaatgtttcatatttgaTTGAATGCTTTGTGGGGGTTTTCCCCTCCCCTCTGTGCATGATAGAAATGTCAATActtaaagctttattttatttttttcttttattgaaaatgtaagtaaaacCAGTTTGAAAAAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017458 True 1957 mRNA 0.45 11 5052292 5067312

Neighbor

gene id symbol gene type direction distance location
AMCG00017460 NA coding downstream 42190 4970408 ~ 5010102 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding downstream 138213 4906814 ~ 4914079 (-)
AMCG00017452 NA coding downstream 167943 4876511 ~ 4884349 (-)
AMCG00017453 NA coding downstream 190315 4692133 ~ 4861977 (-)
AMCG00017448 nelfa,LOC100380775 coding downstream 391134 4643696 ~ 4661158 (-)
AMCG00017459 NA coding upstream 141621 5208933 ~ 5209817 (-)
AMCG00017466 NA coding upstream 337532 5404844 ~ 5425674 (-)
AMCG00017467 NA coding upstream 393753 5461065 ~ 5465561 (-)
AMCG00017468 bbs7 coding upstream 399748 5467060 ~ 5484458 (-)
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding upstream 424124 5491436 ~ 5520155 (-)
G90443 NA non-coding downstream 115126 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 387125 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 661802 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 703980 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 705001 4346986 ~ 4347291 (-)
G90520 NA non-coding upstream 188777 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 287950 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 609587 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 712568 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 1323573 6390885 ~ 6391229 (-)
G90400 NA other downstream 507532 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2210398 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2436730 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4700506 160054 ~ 351786 (-)
G89804 NA other downstream 4946407 105685 ~ 105885 (-)
G90501 NA other upstream 91072 5158384 ~ 5221021 (-)
G90502 NA other upstream 155161 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1319940 6387252 ~ 6389038 (-)
G90746 NA other upstream 1665923 6733235 ~ 7188648 (-)
G90749 NA other upstream 2045124 7112436 ~ 7113181 (-)

Expression


Co-expression Network