AMCG00017460


Basic Information

Item Value
gene id AMCG00017460
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4970408 ~ 5010102 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017460
CCTACATTCAGATGGAGTCAAGAGAACTTAAGATGGATTCAAATAAGAGGATTTTCAGCCTGCTTCAGCGTCACAGACTGGAGAAGTTTTATAATGGCTTCCTTGAGTTAGGTGTTGAAGATGAGAAAGACTTCAAAGATAGTGTTACGGAacaaaatttgaattacttgGACATGGATCCATCTATGAACACAGTGGAGGACCTTATGTTAAGAATTTGTCATCAGGAACATGTGGAACACAATAAAGCTGTCTGCCTGTACTCACAGGAAGGGATGCCTTTAACTGATGACCCTTTCTTCAACACGTGGAGTCTAAACGACAGGCAAATTGAAAATGGAAGTGAAATATATGCCATTTTTACACTCAAAGAAAACCTCACATCTACAGTTCAAGGAgcaaaacagatacaaataccAGACACTGGGGAAGACACCGTACGTTGCCATATTATGCTAAAGgGAGATTATGAAGTCCAGGTGGACCTCTCAAAAGACACCCTGAAGGTTCTGAAACAGAAGTTGTCTCGTGAAACAGGAATACCCTATACAGTGCTGCAAGCCAGCCTTCGTGATGTTAGAAGTGACCAGATCATCCGCACCACTAGAATGCCTAAAGAAGCAATActgGTAATCATGGATTCGAGTTCTTCAATGCAGGATGAATGCTATGATAAAGtaaccaaaatgaaaagaatTGATGCTGTCAAACAACTGTTCCATGCCTTTGCTAATAGGAGTATGGCATATGACTTTAAACATGTGATTGGTCTCATGAGAGTCGGAGGAAAAGCAACAATCCTCCATACTTTCACAGAAACTATGGAGACATTCAAGGAATACATAAATAGTCTTAAGTCTTCTGGAAATACTCCTCTTTATGATGGCTTGGACTTTGGCATTTCAGAGCTAGGAAAGATCAAAGAACAATTTCCTGACTGCAAACTACGGATTTTATGTCTCACAGATGGACAGGACGTGGGttCAGTGAGTGACCCTGTGAATGTTGCTGCCAAACTAATCAGTTCTAACATAGTTGTTGATGCCATCATTGTTGGAACTGTGGAAAACTATGTACTACATGGGATTACAAATGTGACTGGTGGCTGCTGTTTCAAACCTTCAACGAGTAAAGATGccttgaaaatatttgaaatggaaactgtCTTATCTCTGGAGTGCAGGAAGGTTAAGAAGAAATATGAAGCATCATCCATCCAGAGGCTGATTTACCACTGCAATGTGAATAGTGTGGGACGTATCTGTCACAACATATTTGATCGCAATTATTCTGCCCATGTAACTATGAGAAACATCCTGGAAGCTGTGTACGGCCTTTTGATTGCACCTGAGCCTGACGATCCATTGGACAGCATCCTGGCTGAGGAATACCAGAGCAGCAGAGGGAAATACCTTGAAGAGGCTAAAAACAGCACAACTACTCATGCCAGCACATCTTTGGAAGACATGGAAAAGACATTGCTGGGCATGGACTTGAAAGATGAACCTGGACCTTCACATTTGATTTGTAGGCTTACAGGAAAGATGTTCATTGATCCGGTGGAAACCCCTTCTGGAAATGTTTATGAGCGCCGTGCTATTGAAAACCACCTGAAAACGAAAGCCACAGATCCATCAAATAATAAGCCTCTACATCAAGCTGAACTGAAATCAAGCTTAGACATGAAAAAAATGGTGGAAACCTACAGAAAGCGCCAAATTCAAGAAACTGctgtataaatcaatacatgtcATATGAGGCACACTTATTCCAAAGAACATAAGCAGATGAAGTTTTATgtccaattaaacaaatgtttaaaataagataGATTTTTAATACTCTAGTTCCATAGTTTAGATTTTATGtaatgggtttattttattgttcaaaataacataacatttgtaaaataatttggaaatgcaTAATTTAGAATTAAACAGCAGTAGATTTTTAGTCAGAAAGGATGTATTGCTTTATGTCAAAAATATCTACCAAttatcaatgtaaaataattgtatatgctgttaaatacataatgtaatCTCATGATTACCCCTGTTAAACTGCCTGAGGAGGAGGAATATCTGTGTCAAAATGAGCAAGATGTGAACTGGTGATACAAAGATTAAGAAATAGTTATTTGGTACCATAAAACTCTTTCTTATAATATTAAGCTTCACAATATATAATCTTATAATAATACGTAGACCTACTGTGTTTTATAAGTAATAGAGAGGCctacaatatatattcaaacCAGCCTTTCAGTAACATAATTCACTCAATTGCCTGGTTAATGAATCAAGATTAACATAATTTTTGGACACTGATTGAAAATATATGATGGACTTACCTTGGCATCTTGGCTGTATCTCTTCTTCTGTGTGCACTGCCCAATAATTCTCCTCCTTTGCCCAGCAACTAAGGATCTTCAGGACAGCAGCATCTCTGAGCATGCCTGATCAAATCCCATCTGTTTGCATCTCACAAATCCCACAATCCATCACTGTGCTTTGCTGCCTATACACTTTCTCCACCAACACTACTATATACTAcagattaaacacattttttgtagtTCTGGGTTCCACTACTTGCTTACTATccaataatattgaaatattttcacTCATTTGCTGTAGTTGTATTGTATACAAGATTTAGGATTGTtaggaaatgctgctctgtggcTGGCTGGTCTCTcatgtgtga

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017460 True 2718 mRNA 0.38 14 4970408 5010102

Neighbor

gene id symbol gene type direction distance location
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding downstream 56329 4906814 ~ 4914079 (-)
AMCG00017452 NA coding downstream 86059 4876511 ~ 4884349 (-)
AMCG00017453 NA coding downstream 108431 4692133 ~ 4861977 (-)
AMCG00017448 nelfa,LOC100380775 coding downstream 309250 4643696 ~ 4661158 (-)
AMCG00017447 LOC106608414,LOC107396729 coding downstream 350340 4601504 ~ 4620068 (-)
AMCG00017458 NA coding upstream 42190 5052292 ~ 5067312 (-)
AMCG00017459 NA coding upstream 198831 5208933 ~ 5209817 (-)
AMCG00017466 NA coding upstream 394742 5404844 ~ 5425674 (-)
AMCG00017467 NA coding upstream 450963 5461065 ~ 5465561 (-)
AMCG00017468 bbs7 coding upstream 456958 5467060 ~ 5484458 (-)
G90443 NA non-coding downstream 33242 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 305241 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 579918 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 622096 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 623117 4346986 ~ 4347291 (-)
G90520 NA non-coding upstream 245987 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 345160 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 666797 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 769778 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 1380783 6390885 ~ 6391229 (-)
G90400 NA other downstream 425648 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2128514 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2354846 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4618622 160054 ~ 351786 (-)
G89804 NA other downstream 4864523 105685 ~ 105885 (-)
G90501 NA other upstream 148282 5158384 ~ 5221021 (-)
G90502 NA other upstream 212371 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1377150 6387252 ~ 6389038 (-)
G90746 NA other upstream 1723133 6733235 ~ 7188648 (-)
G90749 NA other upstream 2102334 7112436 ~ 7113181 (-)

Expression


Co-expression Network