AMCG00017464


Basic Information

Item Value
gene id AMCG00017464
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5330756 ~ 5351825 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017464
GCCATCTACTATGAAATCGGTTTCATTGTGTGTGCCTCTCTGGGAGTTCTGTTTGTTCTTTTGATGCCTCTTGTGGGGCTATGCTTCTGCATGTGTCGTTGCTGTGACAACTGCGGAGGGGAGATGCACCAGAGACAGAAGAAGAACGCTGACTGCCGGAGAGGCTGCTTAACAACGCTCCTCTTCACCACATCTCTCGTCATCTCAGCGGGTGTGTTGTGTGCATATGCTGCTAATCAGAATATAAGCAATCAGCTCAGGGGAGTTAAGAAACTGGTCAACAGCAACTTCAGAGATCTGAAAACGCTGGTCAACGATACACCATCGGTAAGGATTTTCATGTGCCAGATTTCTAATCTAAATTTGTTTAATATTGGCCCTTTGCTGGGCAAGAGGATTCATGATCAATTGGGAAAGGAAGTTCGGCCCGCCCTGGATGGGGCGTTGAACATGGCTGGAGCAATGAGGGAAACCAAGGAAGCTCTGGAGAACGTCAGTGTGTCCCTGGAGATCCTGCAGGATGGCACCAGCAAGCTGCAGGTGAACCTGAGCAACGTGAGGAACAGTCTGAGCAACACCCTGAACGACCCGGCTTGCTCCGCCCCGGGCGTCTCCAACACCTGCAACGCCATCCGCAATACGTTGGGCCAACTTGCCATCAGTGCCAACTTCACTGCGttgccTGATGTGAACACCCAATTGAATAATGTGAATGATGTACTCAAAACTGACCTCAGCAACATTGTTCAGAAGGGATATTCAACATTTAATAACACCCCAGGCATGGTAAAGAACCAAACAAAGAATGTTGTTGCAGGGATCAAAGGGATGCTGGACAGCATAGGATCCAATATCACCGGCTTTTCCAAGCACTTGCCTATCCAGAGCATTCTGTCCAACGTCACCCTGTACATCAACCAAGGCCAGTCAATGATTGAGGACTACTACCCCTTGATCGATGACTATGACTTCTACAGGTGGATTGGGTGCATTGTGGTGTGTTGCATGGTGGTGCTCATACTTGCCTTCAACTTTTTGGGCCTGCTTTGTGGCTCCTGTGGATATGACAAGCACTCTTCTCCAACTACCAGGGGCTGTGTCTCCAACACTGGGGGCAACCTGCTCATGGCTGGTGTGGGGTTCAGTTTCATCTTCTCCTGGTTGCTGATGCTGGTGGTCTGTATCACTTTCACCATTGGGGGAAATCTACAGAAGCTTGTGCTGGACACTCCTTATTTAATCACTCCTTACTGGAAGAACTCCATCCCTGGCTTTCTGTATCAGAACTCTGAGATAGATCTCACCATTGAGAAAGTTTACAGGTAA

Function

GO: NA

KEGG:

id description
K06532 PROM1, CD133; prominin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017464 True 1326 mRNA 0.49 10 5330756 5351825

Neighbor

gene id symbol gene type direction distance location
AMCG00017456 NA coding upstream 58069 5232468 ~ 5272687 (+)
AMCG00017457 NA coding upstream 282514 5009181 ~ 5048242 (+)
AMCG00017454 NA coding upstream 430093 4884961 ~ 4900663 (+)
AMCG00017451 NA coding upstream 462286 4861374 ~ 4868470 (+)
AMCG00017450 NA coding upstream 638801 4689878 ~ 4691955 (+)
AMCG00017463 NA coding downstream 3937 5355762 ~ 5370642 (+)
AMCG00017462 NA coding downstream 21532 5373357 ~ 5375454 (+)
AMCG00017465 NA coding downstream 26634 5378459 ~ 5379148 (+)
AMCG00017461 exosc9,LOC107746036,LOC101063486 coding downstream 73606 5425431 ~ 5459702 (+)
AMCG00017470 kiaa1109 coding downstream 186687 5538512 ~ 5624154 (+)
G90477 NA non-coding upstream 108004 5091668 ~ 5222752 (+)
G90475 LOC104962440 non-coding upstream 231869 5088593 ~ 5098887 (+)
G90436 NA non-coding upstream 419964 4901022 ~ 4910792 (+)
G90413 NA non-coding upstream 620682 4697938 ~ 4710074 (+)
G90338 NA non-coding upstream 940215 4385241 ~ 4390541 (+)
G90551 NA non-coding downstream 53617 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 55823 5407648 ~ 5412689 (+)
G90554 NA non-coding downstream 59906 5411731 ~ 5412261 (+)
G90561 NA non-coding downstream 88387 5440212 ~ 5463064 (+)
G90647 NA non-coding downstream 325076 5676901 ~ 5677244 (+)
AMCG00017446 NA other upstream 642533 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 724185 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2635303 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 5118820 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 5232359 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1377913 6729738 ~ 7188643 (+)
G90877 NA other downstream 2316358 7668183 ~ 7671850 (+)
G90881 NA other downstream 2340760 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2454553 7806378 ~ 7813639 (+)
G90955 NA other downstream 2780543 8132368 ~ 8132854 (+)

Expression


Co-expression Network