AMCG00017466


Basic Information

Item Value
gene id AMCG00017466
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5404844 ~ 5425674 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017466
GTGAGGAGTGCATAATGGCTTTAGCCTGTGAATGTAGATTAGCTGCCCTGCGAGCTCCTTAAATGGATACTgctcaaaacattacaaagtgcgcaagaaaacaattaatcaattacacaCTGGACAAGTATTTGCAACCAAGAGGAAAATGTATCCATTCCAAAGAAGGGGGCGGGGAGAGAGACCCCACAGGTAACATTTCAGGTAGCACCTGCTTTCGCCCAGCATCGGCCTCAAACCACATTTCCCAGAGTGCATTGGTTTTGCACACGGTTTCTCGTGTCTTTCCTCTTTTTCCTGTGTGCTGGGTGTGGTGCTCGACGACACAGAGACTTCTCTCCATTCAGCCGGAGTTCCTCAGTCAGCTGTCCTGTCTCGCCTGCGGAGGTCCTGTGCACAAGTTCAGTTCATTTTGCTTGAATAACTCCACAATACAGCAGCTGCAACAATGgcTTCCGGAGGCACCGTAAAACCCTATCCCCAGTTTGATGCAAATGCAGATGCACAGACCCTGTACAAGGCAATGAAAGGACTGGGGACTGATGAGGAAACCATCCTGAAGCTCCTGACTGCCCGCAGCAATGCTCAACGGCAGCAAATTGCACTTGCTTACAAGACGCTGCACGGAAAGGACCTGATTGGGGATTTAAAATCAGAACTCGGAGGGAAGTTTGAGACTCTTGTTGTTGGTCTGATGACTCCTCCAGTTCTTTATGATGTTCATGAACTCAGGAGTGCGATTAAGGGTGCTGGGACTGATGAGAAGGTGCTGGTAGAGATTCTGGCCTCTAGGACACCCAAGCAGGTCAAAGAAATCATTGCAGCATACAAAAAGGAGCATAATGCTGATCTTGAGGCAGATGTTACTGGAGATACCTCGGGGCATTTCCAGAGGATGTTGGTGGTTCTGCTGCAGGCAGGTAGACAGCAAGGAATTGATGCTGGAAAAATTGAACAAGATGCTCAGgACTTGTTTGctgctggggaaaaaaaatatggcACTGATGAAGACACGTTCATCACCATCCTGGGGAACAGAAGCGCTGAACACCTCAGGAAAGTCTTTGAAAAGTACATGACAATTTCTGGTTTTGAGATTGAAGAAAGCATCGAAAGAGAAACCTCAGGGGGGCTGAAAAGTGTGCTATTGGCTGTTGTGAAATGTGCCAGGAGTGTTCCAGCATACTTTGCTGAAAGCCTCTACTTTGCAATGAAGGGAGCTGGGACTGATGACAAGACTCTGATCCGGATCATGGTGTCCAGAAGTGAAGTGGACATGCTAGACATCAGAGCACAGTTCAGGAAAATGTTTGCAACATCTCTTCATTCAGTGattcagGGTGATACATCTGGTGACTATAGGAagaccctcctcctcctctgtggtGGGAACGACGCATAACAATACCGTATGAAGGAGCGCTCTGCTGTGCTTTTCTATCTGCACTTGTTTAATAATACTAAATGCATACAGCTTGCACAACTGAAGGACCAAAGTGCGACATAAtgctcagtttgtttttcattttaatacttgcTTTGCAGTGGTCATTAAGCATTAGTTAGTTACAGTTTGATATTCTATTCATGTATTTGGATTGTACTAAAAGCTATCAGTGACTTTGTACTCCAGAAAGCATGTTCTTTAGAAGTGGTTATTCAGAGCTTTGACCTGTGCCTTTAAACCTGTCTTAAGCTGTATCAAGACATTTTATTCTCGGTCAATATCAGTCAATTGTTGTCTTTATTCACCATggtccatttaaaatgttatgttaactTAGGACAGTAACACCACAACttaataaaaatggtttccataaaaaactgtttttgtgGTTGAATGTGTTTGGTATAACAATAGCAACTACATGTCAAATCGAGAAAAGAAAACTTGAGGTATAAAGTGCATAAACATAACTTTTAAATAGCCAGCAGAAATTGTCCTGAATTTATTTGAggacaaatgtttaaatacaatttttaaattagcattttGCTTAATATGAGGTTAATAcgtttttatgtattatgtttgttagttttgccacagattatacatttttataatttgcaataggtatgtaaacatttaaatcatagCTATGCACAACACATTCATGACAATCTCCTTATTCTTTACTGTGACATTAGGCGCATTTACACTGACCTGCTCAAGCTTCTGCATGCACTGTGGCGGTGTGTGTTTTAGAGGCAGGGGGCAGACAGCATCGCTTCCCTACTgcccatattataaatataatactgtTAAAATTTACACTAAATGACTTATTTCATGTTACCAAAAAtatatcattgtatttttattttcaatgctttggtAGTGAAATAATATGGAAATGCGTtagttttacttgttttaatatttgtaacgA

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0050819 negative regulation of coagulation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
K16646 ANXA5; annexin A5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017466 True 2396 mRNA 0.41 13 5404844 5425674

Neighbor

gene id symbol gene type direction distance location
AMCG00017459 NA coding downstream 195027 5208933 ~ 5209817 (-)
AMCG00017458 NA coding downstream 337532 5052292 ~ 5067312 (-)
AMCG00017460 NA coding downstream 394742 4970408 ~ 5010102 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding downstream 490765 4906814 ~ 4914079 (-)
AMCG00017452 NA coding downstream 520495 4876511 ~ 4884349 (-)
AMCG00017467 NA coding upstream 35391 5461065 ~ 5465561 (-)
AMCG00017468 bbs7 coding upstream 41386 5467060 ~ 5484458 (-)
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding upstream 65762 5491436 ~ 5520155 (-)
AMCG00017473 cetn1,LOC106604590 coding upstream 338896 5764570 ~ 5767143 (-)
AMCG00017472 NA coding upstream 365174 5790848 ~ 5808491 (-)
G90540 NA non-coding downstream 48528 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 148438 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 467678 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 739677 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 1014354 4384583 ~ 4390490 (-)
G90648 NA non-coding upstream 251225 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 354206 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 965211 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 969974 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 970954 6396628 ~ 6396891 (-)
G90502 NA other downstream 181797 5222473 ~ 5223047 (-)
G90501 NA other downstream 183823 5158384 ~ 5221021 (-)
G90400 NA other downstream 860084 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2562950 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2789282 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 961578 6387252 ~ 6389038 (-)
G90746 NA other upstream 1307561 6733235 ~ 7188648 (-)
G90749 NA other upstream 1686762 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 2242350 7668024 ~ 7679350 (-)
G90937 NA other upstream 2405211 7830885 ~ 7832592 (-)

Expression


Co-expression Network