AMCG00017467


Basic Information

Item Value
gene id AMCG00017467
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5461065 ~ 5465561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017467
TTCTGGATTAGCCGGCCGCCGTAGTTTGGTGACGTACATGCCCTCTCGGCTGCGATTGGATGATTTCAATAGTCGCGGGCTACTTGAACGGGGAGAGCAGCAGTTTAGCAACTGCAGGAACTGAGAGAAACAAAGTGCGATCCGCTCAGGCATTAGCAACTACGACAGCAACACACGAAAGGCGGGATGGAGAGCTGAGACTGGGTTTTAGGAGACGCGGTTGTGCCGCACTGTTGCTTTAGAGGACTTAAGCCCTGGTGTTGCTAgcgggtttttttgttttgttttgttgagtgCATATTTACGATTTAAACGTAACTGGTTTAACTGAGATCTTAGATCACTGTTGTAACATTTTAGATCTGTGGTTTTACTGGTTCggaaaaaatgaataacttgCTAAGAGAGCAGAACCAGGAGAACATGCATCCGAGGCAAAGGACGGCTGTAAAAGATGCGCTTGAAAACCAGGAGAACATCAACCCCAGGGCGCCGGGCCGGGCGGTGCTGGGCGTCCTGCAGCACAACCAGCGCAGCAGGCCGCACTTGCAGCGCAGCACCAAACAGAGCTATACCTCACAAGGGTTGTCCTGCACAAATGATGAGAACTATGTCAAGGGTCCTGCGGAGAAAGGGGCAGTCAAAGCGCCTGCGTTTGCCATCCATGTGGATGAGCCCGATGGTGCTTGCACAAAGAAGCAAGTGgccaccaaaacaaaatgcctcGCCGAGAAGCCCCTGCTCACCCTAAACCCATCTGTAACGTGTCTGGGAAACCGGCAGCCACTGTCCACGCTCGAATGTTCCATGGATGTTAGTTTTGATTCCCCAATGGTTTTGGATATGTCAGTTTCCGAAACGGAGGAAAAGCCACTGAATGTTAATAAAGTACCAGACTATGCTGTAGACATCTTCAAGTATTTAAGGGAAATGGAGCTGAAGACCAGGCCAAAAGCAGGGTACATGAAGAAACAGCCCGACATCACAAACAGCATGCGGGCTATTCTTGTGGACTGGTTGGTTGAGGTGGGAGAAGAGTACACGCTCCAGAACGAGACGCTCTACCTGGCTGTAAACTACATTGACAGGTTTCTCTCGTCGATGTCGGTGCTCCGAGGAAAGCTGCAGCTCGTTGGCACGGCAGCCATGCTTTTGGCTTCgaAATTTGAAGAGATCTACCCTCCAGAAGTGGCCGAGTTTGTCTACATTGCAGATGATACGTACACTAAGAAGCAGGTGTTGAGGATGGAGCATCTCATTTTGAAAGTCTTGTCGTTTGATCTTGCCGCCCCTACGATAAGCCAGTTTCTCTCTCAATACTTCCTGCATCAGAAGGTGAATCCCAAGGTTGAGAGTTTGTCAATGTTCCTGGGGGAGCTGAGTTTAGTTGACTCCGACCCTTTCCTGAAGTACCTTCCGTCGGTCCTAGCAGCTGCAGCCTTTGCTTTGGCAAACTTCACCATTACAGGAGGCTCATGGGGGAAGTCGTTGGTGGAGTTGACTGGGTACACAGTGGAGAGTCTCTTGCCTTGTATAAACGACCTGCATGAAACCTACCTCACTGCTCCGAAACATGCACAACAGTCTGTGAGGGAGAAATACAAGGGTTCAAAGTATCATGAAGTCTCTGCCGTTGAGCCACCCGAGAAACTGACCCTGGTGTAAATAttgcagttttaaatgtataccatGGAgagacttttctgtacttttatttttttatacacgTCACTACTATGACCAGAATAATTCGGTAACTGAATGCCACAGGTGTTTCGATGGTAAACatgaatgggatttttttttattaaatgtgcaaTCTTGTATGGTTATTTTTGCTTGATGCAACTTTTGTAACCTAGTTAATCAGGCATTGTTTTAACTGCTAAAGTGTTCCCGTTGATGCCCTTGCTTTTGGGAGATCTCGCAGgggttgtttttaatctgttgtcaatttgtacattttaaatcttcagTAATAAAACTATTGCTGCCGTGACTTTTCCCAATTTTGTTTGGTCATCTGCAGTTCAAAGCTTCTTTTGGAAAGTGTACTTTGACTTCATTTTTAGTTCACTTGAGTCTAATCTAGGCAGCCTTTATTTCACAAGGAGTATTCGTTAAGGCCTTTAAAGTCTGTGGTTtggtgaatacatttgaaccatctacataaaaaatatataacacgGTGACACTCCATGATTTAAAGCTAGTCTAAACTGTAGACGCATGTGTTGCATTATTGATCTG

Function

GO: NA

KEGG:

id description
K06627 CCNA; cyclin-A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017467 True 2250 mRNA 0.46 8 5461065 5465561

Neighbor

gene id symbol gene type direction distance location
AMCG00017466 NA coding downstream 35391 5404844 ~ 5425674 (-)
AMCG00017459 NA coding downstream 251248 5208933 ~ 5209817 (-)
AMCG00017458 NA coding downstream 393753 5052292 ~ 5067312 (-)
AMCG00017460 NA coding downstream 450963 4970408 ~ 5010102 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding downstream 546986 4906814 ~ 4914079 (-)
AMCG00017468 bbs7 coding upstream 1499 5467060 ~ 5484458 (-)
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding upstream 25875 5491436 ~ 5520155 (-)
AMCG00017473 cetn1,LOC106604590 coding upstream 299009 5764570 ~ 5767143 (-)
AMCG00017472 NA coding upstream 325287 5790848 ~ 5808491 (-)
AMCG00017476 ankrd50 coding upstream 716165 6181726 ~ 6211002 (-)
G90540 NA non-coding downstream 104749 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 204659 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 523899 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 795898 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 1070575 4384583 ~ 4390490 (-)
G90648 NA non-coding upstream 211338 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 314319 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 925324 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 930087 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 931067 6396628 ~ 6396891 (-)
G90502 NA other downstream 238018 5222473 ~ 5223047 (-)
G90501 NA other downstream 240044 5158384 ~ 5221021 (-)
G90400 NA other downstream 916305 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2619171 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2845503 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 921691 6387252 ~ 6389038 (-)
G90746 NA other upstream 1267674 6733235 ~ 7188648 (-)
G90749 NA other upstream 1646875 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 2202463 7668024 ~ 7679350 (-)
G90937 NA other upstream 2365324 7830885 ~ 7832592 (-)

Expression


Co-expression Network