AMCG00017468 (bbs7)


Basic Information

Item Value
gene id AMCG00017468
gene name bbs7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5467060 ~ 5484458 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017468
GGAGAATCATTTTGGATCCTAATCCTCTGAGTCCGACAGCATTTGTACAGTTATTGTAGCGAGTCACGTTTTCTGTGCAAATACACAAGTAATTTAGCATATTTGTACAGTTTGAAATAAAGCCTTTCggacgtttgttttgtttcttctgaacCCTTGAAGATGGAAATAAATTTGCATCGCAACGATTACCTTCAGGTTGGAGTTACATCCCAGAAGACAATGAGGCTCCTTCCAGCACTGGGTCGCAAAGCAACACAAAAGgTTGCAGTTGCAGATAATGATGGTGTAATAACGTGTTTTGGAATGAAAAAAGGTGAAGCAATTCCTGTCTTCAAGACTTTGCCAGGACAGAAGATCTCTAGGCTGGAGCTGGGTGGGGCTCTGGGAACACCCCAGGAGAAGATTTTTATTGCTgcagggtcagaggtcagaggatTCACAAAGAAGGGCAAAcagtttctttcatttgaagCTAACCTTACAGAAAGCATCAAGGCCATGTATATTTCAGGTGCAGATCTATTTGTTTGTGCAAGCTACATTTATAACCACTACTGTGACTGCAAGGACCAGGATTACTACCTGTCAGGGGACAAAATCAACGACATTATCTGCCTGCCAGTAGAAAACCTGGATCATATAGCTCCCGTGCTGGCATGCCAGGACAGAGTCCTCAGAGTATTACAGGGATCTGAACTTGTATATGAAGTTGAAGTTCCTGGACCTCCATCTGTCTTAGAGTTAAACAACAGAGATGGAGGCAGCCAAGGTGGAGAAGTTCTGTACGGCACATCTGATGGAAAGCTGGGACTGATTAGGATCACAGATACCTCTTCAGTTAATAAATGGGAAGTTGTAAATGAAAAGAAGAGGGGAGGTATTTTGTGCATTGATTCATTTGACATTCTTGGTGATGGAGTAAAAGAAATCCTTGTGGGCAGAGATGATGGAACAGTGGAAGTTTATGGGCTTGACAGTTCAAATGAGCCTGTACTACGTTTTGAACATacccTTTCAGAGAGTGTCACATCTATCCAAGGTGGTTGTGTTGGAAAGGAGTCTTATGAGGAGATCTTGGCAGCAACCTATACAGGCTGGGTGACTGGACTCACTTCAGAACCACAACAGAGGGAAGTGGGGCCTGGAGAGGAAATAAAGATGAGTCGAGAGACACAGAACAAAATTGCCGTACTCAGGGCTGATCTGGAGCAGCTGCAGATGAAGGTGCTTCAGGAGCGTGAGAAATACCAGCAGTCTTCACAGTCCAGCAAGGCTGTGTCTACTGTGCCAACCTTCAGCGTCAACGACAAGTTCACTCTCTGCCAGGAGGATGCCAGCTACAGCCTCACTCTGGAGGTGCAGACAGCCATCGACAATTTGCTTCTGCAGAGCGATGTTCCAATAGACTTGCTGGATGTAGATAAAAACTCTGCAGTTGTCAGTTTCAGCGAATGTGATTCATCTGAGCCAAATGGTAACTTTCTTCTTGCTACATATCGATGCCAGGCAAACACTACAAGGCTTGAGCTTAAGGTCCGATCCATTGAAGGCCAGTATGGCATTCTGCAGGCATATATAACTCCACGTCTGCAACCAAAAACCTGTCAGGTCCGCCAGTATCAAATCAAACCCTTGTATCTTCATCAAAGAACACATTCCATTGAGCATGATCGGCCAATGAACACTCTGACTCTCACAGGACAGTTCAGCTTTGCAGAGATTCATTCATGGGTAGTTTTCTGTCTCCCTGACGTTCCTGAAAAGACACCTGCAGGAGACAGTGTTACTTTCTACTTTCAGAACACTTTCCTCAGCACACAGCTTGAATGCACATACAGTAAAGGCCAAGGGAACTTTAAATCAGACAACATCTCTACAATATCTATTCTCAAGGATGTCCTTTCCAAAGAAGcaaccaaaagaaaaatgaaccTCAACATTTCGTATGacatCAATGAAGACTCTGTAAATCACACTTTGAAGATGATCCATCCGAAGCTGGAATACCAGCTGCTCTTGGCCAAAAAGGTTCAGCTAATTGATGCTTTAAAAGAGCTGCAGGTTCACGAGGGGAACGTTGACTTCTTAATCCCAGAGTATCGCAGTATTCTGGAAGAAGCCAGCCACCTACTTgaggaatacaaaaaacagcCAGCACATTTAGAAAGATTGTACGGTATGATTACAGATCTCTTCATtgacaaattcaaattcaagggACAGAATGTGAAATCCAAGGTTTCATTGCTGCTTGAGATTTTGGACAACTATGATCTTAATTCTTTAATGGGATTCTTTGATTCAACTTAAGGCTGATATAAATAATGATCTAATCCACTATAATTctatatgtgtatgtaatttGCTATACATGTGCTTTCCTCATGTTATAGAGATTGTCAGATGTCATTACAGGATGATTTGGTCATGTGAAAACACTAGTTGAACACTTTGATAAAAGAGAATAGATCATTTTATATGATGGGCATTTCCATAGTGTGTTtacttcagatttgtaaatgatGTATCATAGTTCAAAATAGCATTGTAAATTAgtttacataatataatatgtaaaaagtattttaagctttctgttattttataaaAGTGCAGTTGATACAATGGTTGTTTAAAGACTGCACTTCAcaaggaatttaaaatatatgttacaaTAAACAGACATTCCAACAATAAATTATTCTGGATGTTGTTTATCAGCCATAGCAATCTGACCAATGATATGGTaatgtttacttaaaaaaagGTGCAAGGTTTATTCTACATGCTTTTTTGTATTGCAGTACATAAATCCATTTATGTGTATCCAAATGACATCTGTCTGTATTTGTTGGACCTGTGTATCTGATGTTCATAAGTTACTTTTGTGatatttaaacattgaaatagaaaataaaaaacaaacagaacaaaactcaTTACAGCTTCAATTTACTTGACTTCTACCATCACACAAGCAATTCTATTCTGgataaataaattgctttcaAA

Function

symbol description
bbs7 Acts upstream of or within several processes, including Kupffer's vesicle development; embryonic morphogenesis; and establishment of pigment granule localization. Predicted to be located in cilium; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in cytoskeleton; membrane; and neuron projection. Is expressed in brain; eye; fin; and otic placode. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 7. Orthologous to human BBS7 (Bardet-Biedl syndrome 7).

NR:

description
PREDICTED: Bardet-Biedl syndrome 7 protein isoform X1

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0033339 pectoral fin development biological_process
GO:0001947 heart looping biological_process
GO:0034464 BBSome cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16749 BBS7; Bardet-Biedl syndrome 7 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017468 True 3015 mRNA 0.40 19 5467060 5484458

Neighbor

gene id symbol gene type direction distance location
AMCG00017467 NA coding downstream 1499 5461065 ~ 5465561 (-)
AMCG00017466 NA coding downstream 41386 5404844 ~ 5425674 (-)
AMCG00017459 NA coding downstream 257243 5208933 ~ 5209817 (-)
AMCG00017458 NA coding downstream 399748 5052292 ~ 5067312 (-)
AMCG00017460 NA coding downstream 456958 4970408 ~ 5010102 (-)
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding upstream 6978 5491436 ~ 5520155 (-)
AMCG00017473 cetn1,LOC106604590 coding upstream 280112 5764570 ~ 5767143 (-)
AMCG00017472 NA coding upstream 306390 5790848 ~ 5808491 (-)
AMCG00017476 ankrd50 coding upstream 697268 6181726 ~ 6211002 (-)
AMCG00017482 NA coding upstream 1233978 6718436 ~ 6721393 (-)
G90540 NA non-coding downstream 110744 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 210654 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 529894 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 801893 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 1076570 4384583 ~ 4390490 (-)
G90648 NA non-coding upstream 192441 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 295422 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 906427 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 911190 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 912170 6396628 ~ 6396891 (-)
G90502 NA other downstream 244013 5222473 ~ 5223047 (-)
G90501 NA other downstream 246039 5158384 ~ 5221021 (-)
G90400 NA other downstream 922300 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2625166 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2851498 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 902794 6387252 ~ 6389038 (-)
G90746 NA other upstream 1248777 6733235 ~ 7188648 (-)
G90749 NA other upstream 1627978 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 2183566 7668024 ~ 7679350 (-)
G90937 NA other upstream 2346427 7830885 ~ 7832592 (-)

Expression


Co-expression Network