AMCG00017469 (trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597)


Basic Information

Item Value
gene id AMCG00017469
gene name trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5491436 ~ 5520155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017469
ATGTCAGCGAAAGGGAGACGGTATCAGAAGCGAGTGTCTTTCTCTGAAGAGGAACATGAGCAGGATTGGAAAGAAGAGAACGGGGGTCTGGATGCACATTACTTAAAATCGGTCAAAACCGTCCGAGACACGTCTGGCTATTATCAGTACACAGCGCCAGGCAGTGACAATCCCACGCAGAGGAGGCTGACGATGATGAGGGAGAAGGGCCGCCGGCAGGCTGTGCGAGGCCCAGCATTCATGTTCAACAACAGAGGGACCAGTCTGACCAGTGAGGAGGAAAGGTTCTTGGACGCGGCGGAGTATGGAAACATCCCCGTTGTGCGCAAGATGCTCGAGGAGTCCAGTACGCTGAACGTCAACTGTGTTGACTACATGGGCCAGAATGGCCTGCAGCTCGCAGTGGGGAATGAACATTTGGAAGTGACTGAGCTTCTCCTCAAGAAAGACAACCTGGCACGCATTGGCGACGCTCTGCTTCTCGCCATCAGCAAGGGCTACGTGAGGATTGTGGAAGCGATTCTAAACTACCCATCTTTTGTCACCAGCGAGCGTTTGACTCGCAGCCCCTGTGAGCTGCAGGATGACGACTTTTACTCGTACGATGAAGATGGCACAAGGTTCTCACCTGACATCACCCCCATCATTCTAGCTGCGCATTGCCAGAAGTACGAGGTTGTGCACATGCTACTCATGAAGGGCGCTCGCATCGAGAGACCCCATGACTACTTCTGCAAGTGCAATGAATGCACGGAGAAGCAGAGGAAGGATTCATTCAGCCATTCCCGCTCAAGGATAAATGCTTACAGAGGACTAGCAAGTCCAGCTTACCTGTCTCTGTCCAGTGAAGACCCAGTCCTCACTGCCTTAGAACTCAGCAATGAACTAGCCAAGCTGGCCAACATTGAAAAGGAATTCAAGAATGACTATCGCAAGCTATCTATGCAATGTAAGGACTTTGTAGTGGGTGTTCTTGATTTGTGCCGAGATACTGAAGAAGTGGAAGCCATACTGAACGGGGATGTGAGTGCCGAGCTGGAGGAGGGACAAAACCACAGAGCTCTCCTGAGCAGAGTCAAACTGGCCATCAAGTACGAAGTCAAGAAGCTTGGGAAAATCCTGCGCAGTCCCTTCATGAAGTTTGTGGCTCACGCAGCCTCCTTCATCATCTTCCTGTGCTTGCTGGTGTTCAATGCCTCCGACAGGTTTGAAGGCATAACCACCATGCCAAACGTCACCGTCACAGACTACCCAAAGCAGATCTTCAGGGTGAAAACCACCAGGTTCAGCTGGACTGAAATGCTCATCATGGTGTGGGTTTTAGGTATGATGTGGTCTGAATGTAAGGAGCTATGGATGGAAGGGCCTAGAGAATACATCTTACAGCTGTGGAATGTCTTGGATTTCGGCATGCTATCCATATTCATCGCTGCCTTCACTGCGAGATTCTTTGCTTTCCTCCAGGCCACTAAAGCTCAGCAATATGTAGATGAAAAAATTCATGTCTCTGACCTGTCCATGGTGACACTTCCCCCGGACATAGAATATTTTACCTACGCAAGAGATAAATGGTTGCCCTCGGACCCGCAGCTCATATCTGAGGGTCTGTATGCCATCGCCGTGGTGCTCAGTTTTTCCAGGATTGCGTATATTCTGCCCGCGAATGAGAGCTTCGGCCCGTTGCAAATCTCCCTGGGCCGAACAGTGAAGGACATCTTCAAGTTCATGGTTCTGTTCATCATGGTGTTCCTGGCCTTCATGATTGGGATGTTTATTCTGTACTCCTATTACCTCGGAGCTAAAGTCAACCCGGCTTTCACCACAGTTGAAGAGAGTTTCAAAACTCTGTTCTGGTCTATTTTTGGACTGTCTGAAGTGTCATCAGTGGTTCTTAAATACGATCACAAATTCATTGAGAACATCGGCTACGTGCTGTACGGAATATACAACGTCACAATGGTGGTGGTGCTGCTCAACATGCTGATTGCCATGATCAACAGCTCCTATCAGGAAATAGAGGATGATGCAGACGTGGAGTGGAAATTTGCCCGGTCCAAGCTCTGGCTGTCTTACTTCGACAATGGAAAGACGCTGCCGCCTCCATTCAGCATTGtacccagtccaaagtctttcTTCAACCTCATTAAGAGGGTGGTGAACCTCTTCAGATGCAGACGGAGGAGGTTGAAGAAAGATGTGGAGCTGGGTGAACTGAAAGAGATTAAACAGGACATATCAAGCCTGCGCTATGAGCTTCTGGAAGACAAGTCTCAAGCCACGGAGGAACTGTCCCTACTGATACAGAAGCTCAGTGATAAACTCAACATTAACATGACAAGATGTGAATGA

Function

symbol description
trpc3 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in cerebellar ataxia type 41. Orthologous to human TRPC3 (transient receptor potential cation channel subfamily C member 3).
trpc7 Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within calcium ion transport. Predicted to be located in plasma membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane.

NR:

description
short transient receptor potential channel 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017469 True 2349 mRNA 0.49 9 5491436 5520155

Neighbor

gene id symbol gene type direction distance location
AMCG00017468 bbs7 coding downstream 6978 5467060 ~ 5484458 (-)
AMCG00017467 NA coding downstream 25875 5461065 ~ 5465561 (-)
AMCG00017466 NA coding downstream 65762 5404844 ~ 5425674 (-)
AMCG00017459 NA coding downstream 281619 5208933 ~ 5209817 (-)
AMCG00017458 NA coding downstream 424124 5052292 ~ 5067312 (-)
AMCG00017473 cetn1,LOC106604590 coding upstream 244415 5764570 ~ 5767143 (-)
AMCG00017472 NA coding upstream 270693 5790848 ~ 5808491 (-)
AMCG00017476 ankrd50 coding upstream 661571 6181726 ~ 6211002 (-)
AMCG00017482 NA coding upstream 1198281 6718436 ~ 6721393 (-)
AMCG00017481 NA coding upstream 1252667 6772822 ~ 6773798 (-)
G90540 NA non-coding downstream 135120 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 235030 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 554270 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 826269 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 1100946 4384583 ~ 4390490 (-)
G90648 NA non-coding upstream 156744 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 259725 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 870730 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 875493 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 876473 6396628 ~ 6396891 (-)
G90502 NA other downstream 268389 5222473 ~ 5223047 (-)
G90501 NA other downstream 270415 5158384 ~ 5221021 (-)
G90400 NA other downstream 946676 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2649542 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2875874 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 867097 6387252 ~ 6389038 (-)
G90746 NA other upstream 1213080 6733235 ~ 7188648 (-)
G90749 NA other upstream 1592281 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 2147869 7668024 ~ 7679350 (-)
G90937 NA other upstream 2310730 7830885 ~ 7832592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location