AMCG00017473 (cetn1,LOC106604590)


Basic Information

Item Value
gene id AMCG00017473
gene name cetn1,LOC106604590
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5764570 ~ 5767143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017473
AAATCGCGTGTTTACTGACGATTTAGCTGTAGGTTAATTGCAGTCCTCTGAGATATCGTATTTAGGTggttactactactattaaacatttagaaatggcTGCTAGCTACAGGAAGCCTGGCCTTGGCTCTAATCAGCGGAAGAAAGGTGGTCCTAAACCAGATTTGACAGAAGAACAAAAGCAAGAGATCCGGGAAGCATTTGACCTGTTTGATACTGATGGTTCAGGAACCATTGATGTTAAAGAACTGAAGGTTGCTATGCGTGCATTGGGTTTTGAACCAAAGAAAGAGGAAATCAAGAAGATGATAGCTGACATTGATAAGGAAGGCTCTGGGACTATTGACTTTAATGATTTCTTGTGCATGATGACACAGAAAAtgAGCGAGAAGGACTCGAAGGAAGAAATCATGAAGGCCTTTCGATTATTTGATGATGATGGAACTGGAAAGATCTCTTTTAAGAACCTTAAGAGAGTTGCTAAAGAACTTGGAGAAAATTTAACTGACGAAGAACTGCAgGAAATGATTGACGAAGCTGACCgtgatggagatggagagattAATGAGCAAGAATTCTTAAGGATCATGAAAAAAACCAGCctgtattaaaactgaataacaaTACTGTTGTTTTTAGCAGAATATTTTGCACTTTGAATTTGTTAATGACAATTAAACTTAACCAGTTGTCAggttatgtatttttgtgtaattcatttttaaaaatatattgtatatggtACAAGGTCTACTTGAAAATGctggagtaaaataaaaatgtcttcataaattgagaatttttgtaatttatttattgacgaAGCAGAAGAAATTATTTCCCACAAATACAACATTAGATAGTATGGTTTAAT

Function

symbol description
cetn1 Predicted to enable several functions, including G-protein beta/gamma-subunit complex binding activity; calcium ion binding activity; and heterotrimeric G-protein binding activity. Predicted to be involved in centriole replication; mitotic cell cycle; and nucleotide-excision repair. Predicted to act upstream of or within cellular response to heat. Located in centriole; centrosome; and spindle pole.

NR:

description
PREDICTED: caltractin-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K16465 CETN1; centrin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017473 True 874 mRNA 0.35 6 5764570 5767143

Neighbor

gene id symbol gene type direction distance location
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding downstream 244415 5491436 ~ 5520155 (-)
AMCG00017468 bbs7 coding downstream 280112 5467060 ~ 5484458 (-)
AMCG00017467 NA coding downstream 299009 5461065 ~ 5465561 (-)
AMCG00017466 NA coding downstream 338896 5404844 ~ 5425674 (-)
AMCG00017459 NA coding downstream 554753 5208933 ~ 5209817 (-)
AMCG00017472 NA coding upstream 23705 5790848 ~ 5808491 (-)
AMCG00017476 ankrd50 coding upstream 414583 6181726 ~ 6211002 (-)
AMCG00017482 NA coding upstream 951293 6718436 ~ 6721393 (-)
AMCG00017481 NA coding upstream 1005679 6772822 ~ 6773798 (-)
AMCG00017485 NA coding upstream 1209794 6976937 ~ 6981260 (-)
G90648 NA non-coding downstream 87321 5676899 ~ 5677249 (-)
G90540 NA non-coding downstream 408254 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 508164 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 827404 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 1099403 4662836 ~ 4665167 (-)
G90670 NA non-coding upstream 12737 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 623742 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 628505 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 629485 6396628 ~ 6396891 (-)
G90724 LOC103376870 non-coding upstream 926590 6693733 ~ 6694106 (-)
G90502 NA other downstream 541523 5222473 ~ 5223047 (-)
G90501 NA other downstream 543549 5158384 ~ 5221021 (-)
G90400 NA other downstream 1219810 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2922676 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 3149008 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 620109 6387252 ~ 6389038 (-)
G90746 NA other upstream 966092 6733235 ~ 7188648 (-)
G90749 NA other upstream 1345293 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 1900881 7668024 ~ 7679350 (-)
G90937 NA other upstream 2063742 7830885 ~ 7832592 (-)

Expression


Co-expression Network