AMCG00017475


Basic Information

Item Value
gene id AMCG00017475
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5808828 ~ 5816998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017475
ATGTcatctaaaaagaaaaacaaagggaaatctAGTCGATCTAGTGAGGGGGAAAACGGCAGTGTGTTAGGGGATAGTGGTGCCCTGGAGTCACCACAAAACCAAACGTTAGGTATCGAAGAAGATAGGATTCTCTCATTCACTGTTATCGACTTCATTGATAaagCTGAAGAAAGAGTTCCCAAATCTTGCAGGAGATCCCTGGTACAGCTAAGCCTAAACTCCATGAAGTCTGCAAATATCTCTATTGGACGACCAGTTTTGCTTTCCAGCAGTGTGTGCAAGCAAGAGgTGTGCATTGCTTGGCCGGCAGCCAGTTTTCCTGGTGGGAGAGTTGGTCTACATGGGTGTTCACAGCGAAATCTGAAAGTAAAAGCCGGGGATGCGGTGACTGTTCAGCCACTAACGGGCCCTTTACTGCAGGCAGAAGAAGTGCACTTGTCAACCAGGCAAAAAGAAGACATTGTTAACATGGAAGAATTCACAGATTTTCTTCTTCGATCTATGGATGGAAAAGTCATACTTCCGGGAAACTTTCTCACTCTGACCTTTTACGGACGCTCATGCAGCCTGAAAGTGGAGAGAGTGAAAGGAGTGGATGGCATCAGCATGGAAACGTGTGAACTTCTGCCCTCCGAAATAGAAACAGAGGCGTTTGACAAATCCACTTTGGAGACGACAACAGCTGACTTGTCCTTTCAGCTCAGTCAGATGAATATGGAGGACAATGCCAGCACCCCCTGCAAGCCCTGCTCCACTTTGCCACCGATGGCTCCATCTCCATCTGCAGTGCAGACGAGCCCCTCTCCACCTAGACCAGCAGAGGAGCTGTGCAGTGTAGAAGACCAAAGTCTCCATCACACCAGCAGTGAACAAATCCCTCAGTTTCAGGAGTTGCTAATTTCACCCACTTTTGACTCTGGAGTTAAATCCAACAgtgacacattttattacatttctctgCTTACAAAAATCAAGTTTATAGAAAAGAATGCAGGCAAGAGAGAGGCTCTGGAGAGCTCACCCAAGGTTACATACAGCATGATTGGGGGCCTGAGTAACCAGCTCAGTGCTATACGGGAAACCATTGAGCTGCCTCTGAAACATCCAGAACTCTTCAAGAGCTACGgaaTCCCGGCTCCCAGGGGGGTGCTGCTGTATGGGCCCCCAGGGACAGGCAAGACTATGATTGGCCGAGCGATAGCCAGTGAAGTGGGTGCTCACATCACTATCATCAACGGCCCTGAAATTATGAGCAAGTTTTATGGAGAAACGGAAGCACGCCTGAGACAGATATTTTCTGAAGCTTCTGAAAGGCATCCCGCGATTATTTTTATAGATGAACTAGATGCCCTGTGTCCAAAGAGAGAGGGCGCTCAGAACGAGGTGGAGAAACGAGTCGTGGCCTCACTGCTGACCCTGATGGATGGCATCGGCTCAGAGGAGCACGCTGGGCAGCTTCTTGTGTTGGGCGCCACGAATAGGCCTCACGCCCTGGACCCAGCCCTGCGCAGACCTGGTCGCTTCGACAAGGAGATCGAAATCGGAGTTCCCAACGCCGGGGAACGCGCCGACATCCTGAGGAAGCAGCTGAGCAAGGTACCGTGCCAGCTAACCGAGGAGGCTCTGGTGCAGCTCGCTGACAGCGCTCATGGGTACGTGGGGGCAGACCTGGCAGCGGTCTGTAAAGAAGCA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14575 AFG2, DRG1, SPATA5; AAA family ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017475 True 1695 mRNA 0.50 9 5808828 5816998

Neighbor

gene id symbol gene type direction distance location
AMCG00017474 fgf2,LOC106604591,LOC102794353 coding upstream 16323 5779880 ~ 5792505 (+)
AMCG00017471 NA coding upstream 168586 5625024 ~ 5640242 (+)
AMCG00017470 kiaa1109 coding upstream 184674 5538512 ~ 5624154 (+)
AMCG00017461 exosc9,LOC107746036,LOC101063486 coding upstream 349126 5425431 ~ 5459702 (+)
AMCG00017465 NA coding upstream 429680 5378459 ~ 5379148 (+)
AMCG00017480 NA coding downstream 133838 5950836 ~ 5951792 (+)
AMCG00017477 fat4 coding downstream 495784 6312782 ~ 6317887 (+)
AMCG00017479 fat4,LOC106604622,LOC102795788 coding downstream 544361 6361359 ~ 6370652 (+)
AMCG00017478 LOC106611628 coding downstream 565361 6382359 ~ 6400405 (+)
AMCG00017484 NA coding downstream 1027561 6844559 ~ 6844962 (+)
G90647 NA non-coding upstream 131584 5676901 ~ 5677244 (+)
G90561 NA non-coding upstream 345764 5440212 ~ 5463064 (+)
G90552 NA non-coding upstream 396139 5407648 ~ 5412689 (+)
G90554 NA non-coding upstream 396567 5411731 ~ 5412261 (+)
G90551 NA non-coding upstream 401299 5405442 ~ 5407529 (+)
G90691 NA non-coding downstream 161166 5978164 ~ 5978368 (+)
G90703 NA non-coding downstream 466159 6283157 ~ 6283441 (+)
G90709 NA non-coding downstream 584736 6401734 ~ 6402188 (+)
G90731 NA non-coding downstream 911034 6728032 ~ 6763072 (+)
G90737 NA non-coding downstream 1057969 6874967 ~ 6892610 (+)
AMCG00017446 NA other upstream 1120605 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 1202257 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 3113375 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 5596892 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 5710431 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 912740 6729738 ~ 7188643 (+)
G90877 NA other downstream 1851185 7668183 ~ 7671850 (+)
G90881 NA other downstream 1875587 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 1989380 7806378 ~ 7813639 (+)
G90955 NA other downstream 2315370 8132368 ~ 8132854 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007595 CABZ01085878.1 coding NC_007125.7 CM002898.2 540157 ~ 552036 (-)