AMCG00017476 (ankrd50)


Basic Information

Item Value
gene id AMCG00017476
gene name ankrd50
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6181726 ~ 6211002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017476
ATGGCACAAACCAGTTTGCTGCAGGGGAAGAGGTTTTACTGCAGGGAGTGGGTCTTCCACAAGCTCCAGCACTGCCTCCAGGAGAAAACGAACAGCATCCTCAGTGTTAACAGCACTCCCAACAAACAGGCCAGTGTAGCAAATCCGGTGAGCAATGCCAGCAAAGGAGCTGCCTGGGGAGTGTTGCTGGTGGGGGGTCCGGGCAGTGGGAAGACAGCCCTGTGCACCGAGCTGCTGTGGCCCAGCTCGCCTCAGGGAGTGCACAGGGGGCTGCACAGGCAAGGGCTGGCCTTCCACTTCTGCCGGGCCGACGACTCGGACACCCTCTGTGTGAGCGGCTTCGTCAGGGCCCTGGTGGCTCAGATCTGCCACAGCGGACTGGTCCAGGGATATGAGGACAAAGTTAGAGATCCTGCCGTTCAGAGTGCTTTGCAACCTGGCGAGTGTGAAAGGAACCCTGCTGAGGCTTTCAAAAGGTGCATTCTTCTCCCCCTTCTGGGAGTGAAGCCTCCACAGCAGTCTGTGTTCATCCTGGTGGATTCCATCGACGAGGGGTGCCACTTTGGAGAAGGGGAGCAGAGATCTTCAAGCTCGTCTCGGACTATTGCTGAGCTCTTAGCAAGCCACCATGAGTTCTTCCCTCCTTGGCTGCTCCTAATATGCTCGGCCCGGAAGCAAAATAAAGCTGTAACTAAATTGTTTACAGgATTTCGTAAGATCAGCCTTGATGACCTCCGCAAGGCTTACATAGTCAAAGATGTGCAACAGTATATTCTCCACCGGCTGGACCAAGAAGAAGCACTGAGGCAACACTTGACGAAAGAAACGGCAGAAATGTTGAATCAGCTCCATATAAAAAGCAGCGGATGTTTCCTGTACCTGGAACGAGTGCTAGATGGAGTTGTGGAAAACTTCATCATGCTTCGAGAGATCCGGGATATCCCTGGGACGTTGAACGGGCTCTACCTGTGGCTGTGCCAGAGGCTTTTTGTGAGAAAACAGTTTACAAAAGTGCAGCCAATCCTTAATGTGATCCTTGCAGCATGCAGACCGCTAACAGTTAAGGAGCTGTATCATGCAGTGTGGACAAAAAATATGTCATTGACAATGGAggaatttcaaaagaaaatggatATCCTATCAAAGCTTCTTGTCAATGGCCTGGGGAGCACTAAAATCCTTTTCCATTATAGTTTTGCAGAGTGGTTGTTGGATGTAAAGCATTGCACTCAGAAATATTTGTGTAATGCAGCAGAAGGACATAGGATGATGGCTATGAGTTACACATGCAAAGCCAAGGAGCTTAAACCACTGGAAGTGCAGGAATTTGCATTACACCTGATTAACTCCAACCTCCAAATAGAGACCTATAACCTTGCACTCTGGATGGTATGGAATGGCACACCAGCTAAAGACTCTTTGACAACCTCCATCCCTAAAGAGCAGGAAGTTTTACAGTTGTTGGTCAAAGCTGGTGCCCATGTCAACAGTGAAGATGACCGAGCTTCTTGTATTGTGCAACAAGCCTTGGAAAGAGAGGATTCAATTCGGACTTTACTTGATAATGGAGCGTCTGTGAACCAACGTGACTCCAGTGGAAGGACTTTGTTGGCAAATGCTGCCTACAGTGGCAATTTAGACGTGGTTAACTTGCTGATTTCTAGAGGCGCAAATTTGGAAATTGAAGACAGCCATGGACAGACAGCACTTACACTTGCGGCAAGACAAGGACATACCAAGGTGGTGAACTGTCTCATTGGCTGTGGGGCGAACATCAATCACACTGACCATGATGGCTGGACAGCACTGAGGTCTGCCGCATGGGGAGGACATTCGGAGGTGGTCTCTGCTCTTCTGTATGCCGGCGCCAAAGTGGATTGTGCAGATGCTGACAGCAGAACTGCCTTGAGAGCTGCGGCTTGGGGCGGGCACGAGGACATTGTGCTAAACCTGCTTCAGCACGGAGCAGAagtcaataaagcagataatGAAGGAAGGACTGCACTCATTGCTGCAGCCTACATGGGTCACAGGGAGATTGTGGAGCATCTGCTTGATCACGGGGCAGAGGTCAATCACGAGGATGTGGATGGAAGGACTGCTCTTTCAGTAGCAGCGCTCTGTGTGCCAGCAAGCAAGGGACATGCCTCCGTGGTCAGTCTACTCATAGAGCGCGGGGCAGAAGTGGATCACTGTGACAAAGATGGCATGACCCCATTGTTGGTTGCAGCCTATGAAGGACATGTGGATGTAGTTGATTTGCTGCTAGAAGGAGGAGCAGATGTCGATCACACAGACAACAACGGGAGGACACCTCTTCTGGCAGCAGCATCCATGGGCCATGCCTCAGTCGTCAACACCCTTCTGTTTTGGGGAGCAGCTGTAGATAGTATTGACAGTGAAGGAAGAACTGTGTTGAGTATAGCGTCTGCTCAAGGCAATGTGGAAGTCGTACGGACTCTGCTGGACAGAGGATTAGATGAAAATCACAGAGATGACGCTGGATGGACCCCACTGCATATGGCATCATTTGAAGGGCATAGGCTAGTGTGCGATGCACTTATTGAGCAAGGTGCCCGATGCAGTGAAGTCGATAATGATGGACGAATCCCTCTGATATTGTCTGCTCAAGAAGGACATTATGACTGTGTACAGATACtacttgaaaataaatctagCGTTGATCAGAGAGGTTACGATGGAAGGAATTCACTTCGAGTCACAGCTCTGGAAGGTCACCGAGACATTGTTGAGCTGCTTCTTAGCCACGGAGCCGACATAGACTGTAAAGATGCCGATGGACGTCCAACTCTTTATATTTTGGCACTTGAGAATCAGCTAGCCATGGCCGAATACTTCCTAGAAAACGCAGCAAATGTAGAAGCCAGTGATTCTGAGGGAAGAACTGCCCTTCATGTTTCCTGCTGGCAGGGACATGCAGAAATGGTGCGCTTACTTATCAACTATCATGCGGATGTCAATTCATGTGATAATGAGAAACGCTCTGCTTTGCAGTCTGCTGCATGGCAGGGTCACATCAAGATGGTTAAATTACTGATAGATAACGGAACCCACGTCGATCACACGTGTAATCAAGGAGCAACGGCACTGTGCATCGCAGCACAGGAAGGACACATCGATGTGGTTCAGCTGTTACTAGAACACGGGGCGGACCCAAACCACGCCGATCAGTTCGGACGCACAGCCATGCGGGTAGCTGCAAAGGGGGGGCATTCTCAGATTATAAAAATTCTAGAAAAGTATGGCGCGTCTAGCTTAAATGGTTGTAGTCCTTCCCCTGTGCACACAATGGAACAGAAGGCCCCCCTTTCTGTTACAGGGAAGATGCAGTGTTTAACTACAAAATCCAACAGCTCTGGCAGCACGGGTGTTGCGGATATACAGCCTTCAGGTCGAGGTTTATCCAATGGTCCTGTACATGCCTTTAGCTCTCCATCAGAATCTCCGGATTCAACTGTTGACCGACAGAAGTCCTCTCTCTCCAATAACTCTCTTAAAAGCTCAAAGAACTCTTCTTTGCGAACCACTTCATCGACTGCAACCGCCCAAACTGTGCCCATAGACAGTTTCCATGGGCTTTCCTTTACAGAGCAAATTCAGCAGCACTCTTTGCCTCGCAGCAGAAGCAGACAGTCCATAGTTTCACCTTCTTCTACTACCAAGTCCATAGAACAACATCCTAGTTCACCATCCAGTGAATTTGAATGGAGTCAAGTAAAGCCCAGTCTCAAGTCAACTAAAGGAAGTAAAGTGGGAAATAATGCATCCAATGGCTCCAGCAAGTGTGGGCCAGGGGAGAAGAAAAAGTCAAAGAACAGCGGCTCATCGCAGAGCCAGGTGTTGGAATACGAAATGACCCAATTTGACAAAAGGATCGCTCTAACCAAGCCTGTGTCAAATGTTGGAGTGACAGTGAAACAGCTTCCCCCAGAACCTCAGTGTAAAATTGTGGTTCCCCCCACACAGCAAGAGGTGGGGCGGTCACAACAGCAATTCCTAATCCAACAGCAGAATAGCGCAGAGAAGAAAAGGAATGGCATCATGACCAATCCAAATTATCACCTTCAGGGGAATCAGGTTTTCCTTGGGAGGGTTTCTGTCCCAAGAACTGTGCAAGATAGAGGACATCAGGAAGTACTGGATGGTTATCCCATAGAGTGGAAGCTTTTAACACCTCAAAAGCCTGGGGAAGAATGA

Function

symbol description
ankrd50 Involved in endocytic recycling. Predicted to be located in endosome.

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 50 isoform X1

GO: NA

KEGG:

id description
K21440 ANKRD50; ankyrin repeat domain-containing protein 50

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017476 True 4218 mRNA 0.49 4 6181726 6211002

Neighbor

gene id symbol gene type direction distance location
AMCG00017472 NA coding downstream 373235 5790848 ~ 5808491 (-)
AMCG00017473 cetn1,LOC106604590 coding downstream 414583 5764570 ~ 5767143 (-)
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding downstream 661571 5491436 ~ 5520155 (-)
AMCG00017468 bbs7 coding downstream 697268 5467060 ~ 5484458 (-)
AMCG00017467 NA coding downstream 716165 5461065 ~ 5465561 (-)
AMCG00017482 NA coding upstream 507434 6718436 ~ 6721393 (-)
AMCG00017481 NA coding upstream 561820 6772822 ~ 6773798 (-)
AMCG00017485 NA coding upstream 765935 6976937 ~ 6981260 (-)
AMCG00017487 rpia,LOC107568642,LOC107695020,LOC107671341,LOC102776079 coding upstream 999356 7210358 ~ 7221745 (-)
AMCG00017489 NA coding upstream 1081854 7292856 ~ 7299945 (-)
G90670 NA non-coding downstream 401200 5779880 ~ 5780526 (-)
G90648 NA non-coding downstream 504477 5676899 ~ 5677249 (-)
G90540 NA non-coding downstream 825410 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 925320 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 1244560 4929386 ~ 4937166 (-)
G90716 fat4,LOC104953884 non-coding upstream 179883 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 184646 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 185626 6396628 ~ 6396891 (-)
G90724 LOC103376870 non-coding upstream 482731 6693733 ~ 6694106 (-)
G90751 NA non-coding upstream 549653 6760655 ~ 6876968 (-)
G90502 NA other downstream 958679 5222473 ~ 5223047 (-)
G90501 NA other downstream 960705 5158384 ~ 5221021 (-)
G90400 NA other downstream 1636966 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 3339832 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 3566164 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 176250 6387252 ~ 6389038 (-)
G90746 NA other upstream 522233 6733235 ~ 7188648 (-)
G90749 NA other upstream 901434 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 1457022 7668024 ~ 7679350 (-)
G90937 NA other upstream 1619883 7830885 ~ 7832592 (-)

Expression


Co-expression Network