AMCG00017478 (LOC106611628)


Basic Information

Item Value
gene id AMCG00017478
gene name LOC106611628
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6382359 ~ 6400405 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017478
TCTCCAGCTCTCACCGGTACCGGCATCGTAACCATTCAAGTAGACGACATCAATGACAACATCCCAGTCTTCGCGTCACTCGCATTCCACACCACTGTCCCTGAAGATGCACCGACAGGAACCGATGTCCTGCTCGTCAACTCCTCCGACGCCGACGCAGGCATGAACGCAGTGGTCAGCTACAGCCTGACTGGAGGAAATGGTCAATTTTCCATTAACCCAGCTACTGGACAGATCATCACGAGCACCCTGCTGGACAGGGAGATCAAGAGCAATTATCAGCTGGTAGTTGTGGCCTCTGATGGTGGGCATCCCCTCGCCATGTCAAGCTCTGCCACGGTTTCTGTTGTGATAGCAGACGTTAACGACAACCCTCCACGATTCCATCACCATCCCTATGTCACTCACGTCCCAGCGTCTACTTCTGCAGGTTCCCTTGTGTTTGCGGTCACAGTGACAGATGAGGATTCAGGATCGAACGCCCAGCTTCACTATTCGCTGGTGGGCAGGAACTCCGAGAAGTTTAAGATTGATCCCGTGCGAGGTGCCATCACGGCAAATGAGATGCTCGCCGGGGGCTCTGAAGTTACCTTCACTGTCCGGGTGAAAGACGGTGGGGCAAACCCCAAAACAGACACAACAACTGTGACCGTGAGATTTGTGACAGGGGAAGATTTTCCAGTCATCAAGCCAGGACAGACTGTTTTCAAATTTCCTGAAAACCAGGGAGTTCATACTTTAGTTACTACAATCTCTGGATCGTCTACCAGAAGGGGACCCTTGTCGTACTACATTGCCAGCGGAAATCTTGACGATGCATTTCATGTTGACCAGCAGACAGGAGAGCTCTCCATCAAACAGGCTCTGGATTTTGAAAACATACCAAAGTATGTGCTTTGGATTGAAGCCAGAGATCAAGGCTTTCCTCCCTTTTCATCCTACGAAAAAGTAGAAATAAACATAATGGATGTCAATGACAACTATCCAACTTTTGAAAAGGAATCCTTCAAGGCTGATATCTTAGAAAACTTGTCTCCACAGAGAGTGCTTATTGTTTCAGCAGTTGATGAAGACAGTGTCCAGAATGGGCAATTGGAATATGCAATTATCGATGGAAACAAAGAGAATAGCTTCAGTATCAACAGAGCGACTGGAGAAATCCGAAGCACAAGGCCACTGGATAGGGAGAAGGAGGCTCACGACACAAGTCTTCCCTTCTCTATCAATCCCAACACCGGTGACATAACCATTAGTAGGCCACTGAATAGAGAAGACATGGAAAGATATATTGTCAAAGTCTCTGCTCGCGATTACAGCTGGACAGTCAGCACCGATGTCACTATATTTGTGTCAGACATCAATGATAACGCTCCTCGTTTCAGTCGCCCATCCTACTACCTAGAATACCCCGAGCTCACAGACATCGGATCACTCGTAACTCAAGTCTCAGCAACAGACCCGGACGAAGGCATCAATGGAAAGATCTTTTATTTCATCCGGTCGCAGTCTGAATTCTTTAGGATCAATTCTAGCACTGGAGAGATTTTCATCAAGCAGCGGTTAAAATATCAGAATTCATCAGGAGTGAGCAACGTGAACATCAACCGACACAGTTTCATTGTAACTGCTTCAGACAGGGGGGCTAGACCTCTGATGAGCGAAACAACCGTCATCGTAAATATAGTGGACAGCAATGATAATCCACCTCAGTTTGAAGCAACCGATTATTTCACACCTGTCACAAAGAGTGTTAAGGTCGGTACAAAACTCATTAGAGTTGTCGCCACTGATAAGAAAGACTTTGGCCTTAATTCGGAAGTTGAGTACTTAATATCAGGTGGCAATAGTTCCAATAAGTTCCGTCTGGAAAGACAAAATGGATGGGTGACTGTAGCCTCTTTGCTCACGGCCGATGTGAATAAGATTTTCATGATTGAAGTCACTGCAAAAGACAAAGGAAACCCTCCACTCTCGTCGCACGCTAGACTCCGTGTTGCAGTGACAGAGGAGAATCACCACACGCCAGAGTTCTCCCAAACCCACATCAGTATGTCCATCCCAGAGAGCCTTACTGTGGGCACAGTTATCAGGACAGTTTCAGCTCGAGATAAGGACAAAGAAATGAATGGGCTCATTACATACAATATATCTTCAGGCAACGAAGTAGGCCTTTTCACGATAAATAGTAAGTCAGGTGCCTTAAGCTTAGCAAAGCCTCTGGACTACGAAGAACAACAAAATCTCGAACTCAAAGTAACCGCCACAGACGGGGGCTGGATTGCAAAGACTGGCTATGTTACTATAACGATTCATGTGACTGACGTAAACGATAATGCCCCTGTCTTTGATGCTGATGAATATTTCCCAGTTGTGCAAGAAAACGTCCCCAGTGGCACCACTGTTGTCCGCATGAACGCAACCGACAAAGATTCTGGACCAAATTCCGTAATGGCGTATGTCATTCAGTCTTCCGATAGTGACTTGTTCGTGATTGATCCAAATACAGGCATTATTACTACCCAGGGTTTCCTGGACTATGAATCAAAACAGGTTTATCATTTAACAGTGAAGGCTTTCAACGTTCCAGACGAGGAGCGCTGCAGCTTTGCTAATGTCAATATCCAGTTAAAGGGCGCAAATGAATATGTTCCCCGGTTCGTCTCCAAGCAGTACTATTTTGAGGTGTCTGAGGCTGCTCCGAGAGGGACGATAGTAGGAGAAGTATTTGCAAGTGACCGAGATCTTGGAGTGGATGGAGAAGTCCTTTACCTTATATTTGGCAGAAGCAGAAAGAAGGGCTTCAGCATCAATAAAAAGTCTGGACAGATTTATGTGTCTGGGCCTCTTGACCgcgaaaaagaagaaaaaatctatttgaaagTTCTTGCAAAAAATGCCGGAAGCATAAAGGGGGCAGATATCGATGAAGTTTTTGTTAATATCACTATTCTGGATGCTAATGATCCTCCTGTCTTCACTTCGGAATCATACAACGTGCAGATCAGTGAGGGCATCCCCCCTGGAAGTCTTGTTACCTTTGTGAGTGCAGAGGATTCAGACTCCGTACCCAGCTGGAGCAGGTTCTCCTATTTCATGGGCTCTGATAATGAGAAAAATGCTTTTGCAATTAATCCCCAGACAGGTCAGGTTTCAGTAGCTGCAGAGCTTGATAGAGAGTCCACACCTGTTTACAATCTGACTGTCCTGGCAGTTGATTCCGGTTCTCCTTCTGCTACTGGGAGTGCGAGCCTGATCGTTACATTAGAGGATATCAATGACAATGGCCCCACACTGATCATGACAAGAGGAGAGGTGACAGAGAATCAGCGTGCAGGAACCATTGTAATGAAACTTAGCTCTACAGATCCCGATCTACCTCCAAACCAGGGACCGTTTACATATAGTTTACAAAGCACTGGATCTGCCACAAGCTATTTCAGCCTTAGTCCTGCAGGAGTGCTGAGCACGAGCAGAGAGATTGACAGAGAGCAGATCAGTGATTTCTACCTGTCAGTGGTGACAAAGGACTCGGGCGTCCCACAGATGTCCTCCACGGAAACAGTCCACGTCAAGGTCAATGACCAGAATGACAACCCGTCAGAAGCTAGAACAGTGGAGATCTTTGTCCACTATTTTGGTAACCAGTTTCCTGGTGGAAGTTTGGGTAGCGTGAAACCACAAGACCCAGATGTGCAGGACAGTTTCCGCTGTTCTCTCACGTCAGCAGTCCCAAATCTTTTCAGCATCACTGCAGGTACATGCGATTTGAATTCCAATCCGAGGTCTACAGATGGGACTTTTGAGTTTACAGTTCGCAGCAGTGATGGGGTGCACGGAGCTGTCAACAGCAACATCCGTGTTTTCTTTGTGGGATTTAACAACATCACTGTTGATAACAGCATTTTAATCCGTctaaatgtgcaaaatgttaGAGACTTTTTCACCAATAACTATCTTAGTTTCCTACGCATAGCGAACTCTCAGCTCGCTGGCCTGGGAACTGCTGTGCAGCTCTATGGGGCTTTTGAACAAAATAACAAGACCTTCCTAATGGCTGCTGTAAAGCGAGGCCAAAATCTGTATGTCAACCCCAGTGGAGTAGCCACgttttttgaaagtataaaAGACATCCTTCACAGGCAGAGTGGAGTGCGCATCGACTCGGTGGACCATgacccctgcacacacagcccATGTCAGAATAGAGGAAGCTGCAAGAAGCACCTCAGTGTGAGTCCCAAAATGAAGGCTGAGGAGAGCATCCCTGTCATCCTCGTTTCAAACGAACCTCTCCAGCCCTACGTCTGTAACTGCATGCCAGGATATGCCGGAAGCCTGTGTGAGACTGACATTGATGAGTGCCTTCCGTCTCCCTGCCACAACGGTGGAACCTGCCACAACCTGGTTGGGGGGTTTTCCTGCAGCTGTCCAGAGGGATTCACAGGAATGGCTTGTGAGAGGGATGTCAATGAGTGCCTATCAAACCCTTGCAAGAATGGGGCACTTTGCCAGAATTTCCCAGGAGGTTTCAACTGTCTCTGCAAATCTGGATTTAcaggTGTCTTTGGAAAGCACTGTGAGCTGAATAGCTATGGCTTTGAGGAGTTGTCCTACATGGAGTTTCCCAGTCTGGATCCCAATAATAACTACATCTACATCAAGTTTGCTACTATTCAGAGCAATGCTCTTTTGATGTACAACCATGACAATCAGACTGGAGACAAGTCGGAGTTCCTGGCTCTGGAGATTTTTGAGGGAAGAATGAGATTCTCCTTTAACTTAGGAAGCGGGACCTATAAACTAATGGCGATGAAAAAGGTCTCCGATGGACAGTTTCACACAGTCATTGCAAGGAGAGCAGGAATGGCCGCGTCCCTGACCGTAGACGTGTGCTCTGAGGATCAGGACCCTGGGTATTGCACTGTGAGCAATGTGGCCGTTCATGCTGACTGGACGCTGGATGTGCagcccaacagactcacagtaGGAGGTGTCAGGTCAATAGAGCCAGTTCTTCGGCGCAAAGGACAAGTTGCAACCCACGACTTTGTCGGCTGCATAATGGAGTTTGCTGTTAATGGACGACCTCTGGAGCCGAATGTCCAAGACTGGAAGGCGCTTGTTCAGCAAATGTTTGTAAGCATGGAGGCACCTGTGTGGACTACTGGTCATGGCAACAGTGTAAATGCACAGAAGGGTTTACTGGAAAATACTGCGAAAAATTCATCACGGTTGACACAGCCCTGTCTCTGGATGGCAGTGGCCatcaaGAATGGCAATGTGCATTACACTTCTGATGCTGGTGTGGGAGGAAAGGTGGAAAGAACTGtctcagaattaatggtctcagATGGCCATTGGCATACGCTCCAGCTGCAGAAGAATGGCTCTATTACTTCTCTCCGTGTCGACGGTTCCTACTTAAAGGAAATACTTCACCAGACTCAGGATTTAGGAGGAGTCAATGTGTTAACGCTCTCACTGGGGGGAATTCCACCGGGACCAACTCAACAGAAAACACCCATGGgTTTCGATGGCTGCTTTGCTTATGTTAAATACAAGGGGGAAAACCTGCCTTTCAGTGGGGAGCACAGCTCTGTTACAATATCAAAAACACATCCTTCTGTCAAGATCGGCTGCAGGGGACCCAATGTGTGTGCCAGTAGTCCTTGTTGGGATGATCTCATGTGTGTCAATCAGTGGTACGCCTACGAGTGTGTTCCCCCAGGGCACTGCTCCTCCAACCCCTGTCACAACGGAGGCAGCTGTGAACCCAGTCCCCATGCTGGCTTTACCTGCACCTGCCCTGAGTTTTACACCGGAAGGACCTGTGAGACTGTTGTGGCTTGCCTTGGAGTGCAGTGTCCACAAGGAACTCTATGCATGATGGGTAACAATGGAGGCTTTACCTGCAGTACCACTAAAGGACCAGATGAACTGTCCTTACCCATATGGGCAGTACCTGCCATTGTTGGAAGTTGCGCCACAGCCTTAGCACTGGTGGTTTTGAGTTTGATCTTGTGTAACCATTGTAGGGGGCGAAAGACCACGGTGCCAAAAGAGGAgaagaaaccaaaagaaaaaaagaaaaaagggagtGAGAATGTGGCCTTTGACGACCCAGATAATATCCCTCCTTATGGCGATGACATGACCGTGAGAAAGCAGCCCGAAGGCAACCCCAAACCTGATATAATCGAAAGGGAAAATCCTTACCTTATATATGATGAAACAGACATTCCTCACAATACAGAGACTGTACCCAGTGCCCCCTGTGCTCCCTGTGTTGGCACTGAAGCCGACATTGAGCATTACGACATTGATAATGCCAGTAGCATTGCCCCTTCTGATGCCGATATCATTCAGCACTATAAACAATTCAGGAGCCACACACCCAAATTCTCAATTCAAAGACATAGTCCACTAGGGTTTGCACGGCAGTCCCCTTTACCACTGGGAGCAAGTAGTTACACTTACCAGCCTTCATACAGCCAGGGTCTTAGATCAACCCCACTGAGCCACTCCACCTGCCCAACCCCTAATCCTCTCTCTCGGCACAGTCCAGCTCCTTTTTCCAAGCCATCGTCCTTCTACCGCAACAGCCCAGCGCGGGAACTGAATCTCGCGAGGAGAGAGGGGAGTCCCTTGGACTTACATGGTGAGGTGTGCCAGCCTGGAATGTTCAACTACGCCACCCGCCTGGGAAGGAGAAGCAAGAGCCCCCAGACGATGGCGGGTCACGGTTCCAGGCCAGGGAGTCGCCTTAAACAGCCAATAGAGCAGATTCCTCTTGAGACAGGACCTCCGGTCGGACTCTCTATAGAGGAAGTAGAGAGGCTGAATACCCCTCGGCCGAGAAACCCCAGTATCTGCAGCGCCGATCACGGGAGATCTTCCTCAGAAGATGACTGCAGGAGACCTCTCTCCAGGATCAGGAATCCAGCTGATGGAATTCCTGCCCCAGAGTCCTCCTCGGAGAGCGACTCACACGACTCCTTCACCTGCTCTGAGATGGAGTACGACCGAGAGAAGCCCATGGCTTACAGCTCCAGGATGCCTAAACTGTCTCAGGTCAACGAGTCGGATGCAGATGATGAAGATTATGGCGGCAGGCTAAAGCAGAGGAGGTACTCAAGTCGCAGAGCAGAAGGAGGCCCAAGCACCTCACAATTGCCCTCGACTGAACATTATACCTTACCCCATAAACTAGGTGCCCAAGCTGGGAGTTTTAATTGGGACAACCTGTTGAACTGGGGTCCTGGGTTTGGACATTATGTCGATGTCTTTAAGGATCTGGCTTTACTTCCAGAAAATGCGCCTTCAAAAGATATTGAAATGAACAGTGGTGACGGAGCTGTAgccatttcaaatgaaggaGAGGCAGAACAATACGTA

Function

NR:

description
PREDICTED: protocadherin Fat 4-like

GO: NA

KEGG:

id description
K16669 FAT4; protocadherin Fat 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017478 True 7395 mRNA 0.48 11 6382359 6400405

Neighbor

gene id symbol gene type direction distance location
AMCG00017479 fat4,LOC106604622,LOC102795788 coding upstream 11707 6361359 ~ 6370652 (+)
AMCG00017477 fat4 coding upstream 64472 6312782 ~ 6317887 (+)
AMCG00017480 NA coding upstream 430567 5950836 ~ 5951792 (+)
AMCG00017475 NA coding upstream 565361 5808828 ~ 5816998 (+)
AMCG00017474 fgf2,LOC106604591,LOC102794353 coding upstream 589854 5779880 ~ 5792505 (+)
AMCG00017484 NA coding downstream 444154 6844559 ~ 6844962 (+)
AMCG00017483 NA coding downstream 444570 6844975 ~ 6846106 (+)
AMCG00017488 eif2ak3,LOC107683275,LOC106611393 coding downstream 840038 7240443 ~ 7279492 (+)
AMCG00017491 pik3c3 coding downstream 1058659 7459064 ~ 7475022 (+)
AMCG00017494 NA coding downstream 1204883 7605288 ~ 7606199 (+)
G90703 NA non-coding upstream 98918 6283157 ~ 6283441 (+)
G90691 NA non-coding upstream 403991 5978164 ~ 5978368 (+)
G90647 NA non-coding upstream 705115 5676901 ~ 5677244 (+)
G90561 NA non-coding upstream 919295 5440212 ~ 5463064 (+)
G90554 NA non-coding upstream 970098 5411731 ~ 5412261 (+)
G90709 NA non-coding downstream 1329 6401734 ~ 6402188 (+)
G90731 NA non-coding downstream 327627 6728032 ~ 6763072 (+)
G90737 NA non-coding downstream 474562 6874967 ~ 6892610 (+)
G90738 NA non-coding downstream 483249 6883654 ~ 6883957 (+)
G90733 NA non-coding downstream 574256 6974661 ~ 7011061 (+)
AMCG00017446 NA other upstream 1694136 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 1775788 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 3686906 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 6170423 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 6283962 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 329333 6729738 ~ 7188643 (+)
G90877 NA other downstream 1267778 7668183 ~ 7671850 (+)
G90881 NA other downstream 1292180 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 1405973 7806378 ~ 7813639 (+)
G90955 NA other downstream 1731963 8132368 ~ 8132854 (+)

Expression


Co-expression Network