AMCG00017479 (fat4,LOC106604622,LOC102795788)


Basic Information

Item Value
gene id AMCG00017479
gene name fat4,LOC106604622,LOC102795788
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6361359 ~ 6370652 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017479
gtGGAAATAACACTGCAGGATGTCAACGACAACCCACCTGTTTTTCCAACTGATATGCTTGATCTAACAATTGAGGAGAATATTGGGGATGGATTTAAGATAATGCAGCTAACAGCTACAGATGCTGATGAGGGACCAAATGCACTAGTGACATATACAATAATCAGTGGAGCAGATGACAGCTTCCGCATTGACCCCGAATCAGGAGACCTAATAGCCACCAAACGTCTGGACAGAGAGCACCGGTCCAAATACTCTCTGCTGGTGCGAGCAGACGATGGAAAACAGTCCTCAGACATGAGAGTTAATATCACGGTCAGTGATGTCAACGACCACACCCCGAAATTCTCCAGGAACGTCTACTCCTTTGACATACCAGAGGACACAACACCAGGCTCCATAGTGGCAGCGATCCTGGCAAGCGATGCCGACTCTGGCCTCAACGGTGAGATAACGTACTCCCTGGACGACGATGACGAGGATGCTGCGTTCCTCCTGAACCCCGTGACGGGCGTCTTCAACGTGACGCGGCCCTTGGATTTCGAAAGCCAGCAGTACTACATCCTCACGGTGCGGGCCGAGGACGGGGGCGGCCAGTTCAGCTCTGTCAGAGTCTACTTCAACATCCTCGATGTCAATGACAACTCGCCCGTGTTCAACACCACCTCCTACAGCACATCTGTGATGGAGAACCTGCCTTCAGGATCCAGCATCATCACTGTGAAAGCCAGTGACGCTGATGACGGTCCAAATGCTCAGATGGCCTACAGCATTGCGTCGGGGGATCCTCTGGCTCAGTTTGACATCGACAGCATGGGAGTTGTGAAAACCAAGCAACCTCTGGACAGGGAGACACAATCCTTCTACAACCTTATGGTCCGAGTTCACGACCTGGCCGTTCCGCCGATGCCACGCTTCACCAGCACGGCCCAGGTGTCCATCATTCTGCTGGATGTCAACGATTGCCCACCCAGCTTTACTTCTCAAAAGATGACCTACATCCAAGAGAACACCCCAGTGGACACCGTGGTGTTTACAGCCCAGGCCAGTGACTCAGACAGCGGACCCAACAGCTATGTCGAGTACTCCCTGCTTAGCTCTCTAGGGAACAAGTTCAGCATTGGGACCATCGATGGCAAAGTTAGACTCACAGGCGAGCTCGACAGGGAGGAGCTCTCTAACTACACACTAACTATCGTAGCAACCGACAAAGGCGAGCCTCCCCTATCCTCATCAATGGACGTCTCTGTGATAGTCCTGGATGTTAACGACAACACTCCTAGCTTTTCCCAGAACATCTACGACATGGAAATCGAGGAGAACACCCTGACCGGCACCGACCTAGTGCAGGTGTTTGCCAGCGACGCTGACGAGGGCACAAATGGGCAGATTCGCTTCTCTCTCATTGGTGGGAATGCAAACTCTGATTTTAGGATCGACTCGGTCACAGGCATGATCTCGGTGGCTAGGCAGCTGGACCGGGAGGTGAGGTCCTCCTATTCTTTGGTGGTTCAAGCAGCAGATCGTGGAAGCAGCCCGAGGACTGACAGAGCCACGGTTAATATAGTGTTACTGGATGTAAACGATTGCACGCCGGTGTTTGAGCTCTCCCCTTACACTGCAAATGTTCAGGAGAACTTAAAAAGTCTCCCACAGGATGTGTTACAGGTCATAGCCCGGGATGATGACCAGGGACCAAACAACAAGCTGACCTATACACTTATTGGAGGGAATGAAGATGGTGCCTTCAGCCTGTCTGCCAGTGGGCACCTAAGCCTTATGAAAAGTCTTGACCGAGAAGCaaaggaaaaatacacattgatCATCACAGCTGCAGATTCA

Function

symbol description
fat4 Is expressed in pronephros.

NR:

description
PREDICTED: protocadherin Fat 4

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017479 True 1842 mRNA 0.52 5 6361359 6370652

Neighbor

gene id symbol gene type direction distance location
AMCG00017477 fat4 coding upstream 43472 6312782 ~ 6317887 (+)
AMCG00017480 NA coding upstream 409567 5950836 ~ 5951792 (+)
AMCG00017475 NA coding upstream 544361 5808828 ~ 5816998 (+)
AMCG00017474 fgf2,LOC106604591,LOC102794353 coding upstream 568854 5779880 ~ 5792505 (+)
AMCG00017471 NA coding upstream 721117 5625024 ~ 5640242 (+)
AMCG00017478 LOC106611628 coding downstream 11707 6382359 ~ 6400405 (+)
AMCG00017484 NA coding downstream 473907 6844559 ~ 6844962 (+)
AMCG00017483 NA coding downstream 474323 6844975 ~ 6846106 (+)
AMCG00017488 eif2ak3,LOC107683275,LOC106611393 coding downstream 869791 7240443 ~ 7279492 (+)
AMCG00017491 pik3c3 coding downstream 1088412 7459064 ~ 7475022 (+)
G90703 NA non-coding upstream 77918 6283157 ~ 6283441 (+)
G90691 NA non-coding upstream 382991 5978164 ~ 5978368 (+)
G90647 NA non-coding upstream 684115 5676901 ~ 5677244 (+)
G90561 NA non-coding upstream 898295 5440212 ~ 5463064 (+)
G90554 NA non-coding upstream 949098 5411731 ~ 5412261 (+)
G90709 NA non-coding downstream 31082 6401734 ~ 6402188 (+)
G90731 NA non-coding downstream 357380 6728032 ~ 6763072 (+)
G90737 NA non-coding downstream 504315 6874967 ~ 6892610 (+)
G90738 NA non-coding downstream 513002 6883654 ~ 6883957 (+)
G90733 NA non-coding downstream 604009 6974661 ~ 7011061 (+)
AMCG00017446 NA other upstream 1673136 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 1754788 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 3665906 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 6149423 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 6262962 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 359086 6729738 ~ 7188643 (+)
G90877 NA other downstream 1297531 7668183 ~ 7671850 (+)
G90881 NA other downstream 1321933 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 1435726 7806378 ~ 7813639 (+)
G90955 NA other downstream 1761716 8132368 ~ 8132854 (+)

Expression


Co-expression Network