AMCG00017487 (rpia,LOC107568642,LOC107695020,LOC107671341,LOC102776079)


Basic Information

Item Value
gene id AMCG00017487
gene name rpia,LOC107568642,LOC107695020,LOC107671341,LOC102776079
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7210358 ~ 7221745 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017487
AGTTGTTTGAAGAGCTACACCGTGGGATGCTGGGAAATGTATTTCGCACTGAACTACAATTCCCATCAACCCCCTGGTGTTGGTAGACACAACAGCGATTTTTGCCAGACTTCCTGGAGTAGCGGAGGCCAGCGCGCTAAGGGGCCGGGCTATGAGGCTTCAAAGTGGGATCTGCGTTACCCTCTCAGCCGGATATTTTGGCGCAGCTGTGCGTGGGAGGCAGGGATTGTCTTGTGTTAACAGACTCGGTGAGAGACACGTGTTTTTCGGTCGACGCTGCAGCAGCGGGGCGGCCATGGCAGAAGAGGCGAAGAAACGGGCAGGCTATGCCGCGGTGGACAATCATGTGCAGAACAACCAGGCTGTAGGAGTGGGCAGCGGCTCCACTATTGTTTATGCTGTGGACAGACTCGCGGAGAGAGTGCGACAAGAGAAGCTGAACATAGTGTGTGTCCCCACGTCTTTCCAgGCTCGCCAGCTGATTCTGCAGCATGGTCTCACGCTGACTGACCTCGACAGACACCCGGAGCTGGACGTGGCCATCGATGGGGCAGACGAGGTCGACTCTGAGCTCAACCTCATCAAGGGTGGCGGGGGCTGTTTAACTCAGGAGAAGGTTGTTGCCGGTTGTGCCAAGTGCTTCATTGTCATCGCAGACTACAGGAAGGACTCCAAGGCCCTCGGGCAGCAGTGGAAGAAGGGCGTGCCCATTGAGGTCATCCCCATGGCTTACGTGCCCGTTGCCAGGGCGATCGAGCGGCGGTTTGGGGGGGCGGCGGAGCTGCGCATGGCCGTCAGCAAAGCGGGCCCAGTGGTGACTGATAACAGTAACTTCATCCTGGACTGGAAGTTTGAGAAGGTGCAGAACTGGAAGGAGGTGAATACTGCAATCAAAATGATCCCAGGTGTGGTGGAGACGGGGTTGTTCATCAGCATGGCAGAGCGGGTGTATTTTGGCATGGAGGACGGCACTGTGACCACGAGAGACTGTCCACAGCACTGAGGGTCAGCTGGCCAACCGGACACCCAACGCCCCTTCCTCGATCTTCACACGCATGCCACTCACCTCAAGTGCCCCTCCCTGAACCAGTCTTCCAGTCCTCCGGCACCAGCGAATGGGCCTCCGCCTTTTGATTCGCTCAGGCAGTATCCTGAAGGGAAGGTTTTTAGATGGTAGCCAACTCTTCCAAGTGGCCTTGATCTCCCATTTCTGTCAGTGGCTTTCCTGTAAAGTTGTCTCCATGCCATCTTGCATCGCATCCTATCCTCTTAGGAGGAAGGCTGGGGGATATCGTGCCTGTTCGGTAATGGACAGTCATACCCAATTCACACCGAAGTTGCCTTAATCTGCAGTTTTCAGAGGACCAATTTAGCCAGCCCTCCACACTTAGGTTTGGGGGTCCTGTCATGTGCTGTTGTACCAAGAAGTTGGTGACACCTCTTTCTTTGTCATGCTTGGTTTACCTAATCTCAGCCGTCTCTTTACGTGTATTCACAGCTGCTGATACTGTCACCTGTGCGTTCTCTGTACTGGAAAGTGGAAAGTTACATTTACATCCGCATGCGTAGTATTGTCGTCCATGGATATCGTTAACTCCAGTTTTTCAGTGAGCATGCAGAAGACCGAGACACTCAATCTGCGTATTCTGTCTGCAGTCTGAGCAGCCAGTGTATCGTGGTTTCTGGTGCGCGCCGGCGGCGTTAAACTGCAGAGTAGCGCTTCTGTCAATTTTTACTTTTAGTGATTCTGTATTGAAAGATGCGTATCATCAGTGATATCACATGTACACTTCTCATGTTTTCCCATTTTTGGTTATTAATCATGAATATCTGTGAAATACTTCAGTGTTCCTGCAGCAAAGGGTTGAGATTTTCTACAGCACACacttttaaatcagaaaataattgcattttaatattacatctCACCTCTCAATATCAATTGTAATTTCAAgagctttcctttttttgtcaAGTAATTTGAATTCCTAAAAATTCCTGCattgaattaaagaaaatgtctctGAAGCCAAAATTTTAGTTAATCTGCCTTGCTTTAATCTGAACAAAGTATTCATCTGTTTttcttactactactaatgtGTTCTGTGCCTGAAAGGATAGTATGAGATCTATTCGTAAAACCTGAAAGATGTTAAGACCCACATGATTACAAGCTCTCACAAAGTCTTATGGCTGATCCGttgcaaatcatttattttataaaccaaAAGTACCTCTTAATTTGCCTGTCAGTCTGTAGCAAGGCTGAATGATGAGATTATATTGGGTTCATTGCCCAAGCACTAAGTTACCAAACTGGCATGGGTTTTGTTATTGTACCACCACACTGTGAACTCGTTTCACAAGATTTATGGTTACAAGTTTGCTTTATACTTGTAAGTGTAAAGCAGATAAATCTATTGTTGTCAAAGTAGTGTCACTTACCATATTCTATACTAAACCGCACTCTACAATAAATGACTGCAGACTTTGA

Function

symbol description
rpia Predicted to enable ribose-5-phosphate isomerase activity. Predicted to be involved in D-ribose metabolic process and pentose-phosphate shunt, non-oxidative branch. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in immature eye; liver; midbrain; retina; and yolk syncytial layer. Orthologous to human RPIA (ribose 5-phosphate isomerase A).

NR:

description
PREDICTED: ribose-5-phosphate isomerase-like

GO:

id name namespace
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0004751 ribose-5-phosphate isomerase activity molecular_function

KEGG:

id description
K01807 rpiA; ribose 5-phosphate isomerase A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017487 True 2497 mRNA 0.48 9 7210358 7221745

Neighbor

gene id symbol gene type direction distance location
AMCG00017485 NA coding downstream 229098 6976937 ~ 6981260 (-)
AMCG00017481 NA coding downstream 436560 6772822 ~ 6773798 (-)
AMCG00017482 NA coding downstream 488965 6718436 ~ 6721393 (-)
AMCG00017476 ankrd50 coding downstream 999356 6181726 ~ 6211002 (-)
AMCG00017472 NA coding downstream 1401867 5790848 ~ 5808491 (-)
AMCG00017489 NA coding upstream 71111 7292856 ~ 7299945 (-)
AMCG00017490 NA coding upstream 229897 7451642 ~ 7453573 (-)
AMCG00017492 NA coding upstream 267337 7489082 ~ 7491787 (-)
AMCG00017499 NA coding upstream 366206 7587951 ~ 7594082 (-)
AMCG00017500 gba2,LOC104958191,LOC104958190 coding upstream 403826 7625571 ~ 7639260 (-)
G90783 NA non-coding downstream 4497 7205620 ~ 7205861 (-)
G90762 NA non-coding downstream 86184 7065885 ~ 7124174 (-)
G90759 NA non-coding downstream 326390 6883642 ~ 6883968 (-)
G90751 NA non-coding downstream 333390 6760655 ~ 6876968 (-)
G90724 LOC103376870 non-coding downstream 516252 6693733 ~ 6694106 (-)
G90796 NA non-coding upstream 83 7221828 ~ 7226843 (-)
G90805 NA non-coding upstream 44322 7266067 ~ 7282477 (-)
G90817 NA non-coding upstream 101985 7323730 ~ 7324107 (-)
G90885 NA non-coding upstream 471838 7693583 ~ 7694005 (-)
G90908 NA non-coding upstream 551473 7773218 ~ 7784195 (-)
G90746 NA other downstream 21710 6733235 ~ 7188648 (-)
G90749 NA other downstream 97177 7112436 ~ 7113181 (-)
G90715 fat4,LOC106611628,LOC106604622 other downstream 821320 6387252 ~ 6389038 (-)
G90502 NA other downstream 1987311 5222473 ~ 5223047 (-)
G90501 NA other downstream 1989337 5158384 ~ 5221021 (-)
AMCG00017497 NA other upstream 446279 7668024 ~ 7679350 (-)
G90937 NA other upstream 609140 7830885 ~ 7832592 (-)
G90939 LOC105903575 other upstream 770392 7992137 ~ 7996595 (-)
AMCG00017520 NA other upstream 1251745 8473490 ~ 8514955 (-)
AMCG00017531 NA other upstream 1511015 8732760 ~ 8748743 (-)

Expression


Co-expression Network