AMCG00017496


Basic Information

Item Value
gene id AMCG00017496
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7642275 ~ 7647260 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017496
ATGGCTGCCGTGGCCGACCGGCTCTCCTGTGCTCGGTGTGCCGGGGCAGCTGTGCGCACACTTGCTCTGCGCAGCTGGAGAATGATCGAGGTGGTGGCCACTCTGTCTCGGGGGCCTGTGTTCCTGGCTGGAGAGGTGCTCGAGTGTGTGATCACCTTCACGAACCCCCTGTCCCACCTCTCCACCTCCGCCAGCAGTGAGATGCTGGCATGGGCCAGTGCGCAGATCCACTGCCAGTTCCATGCCAGTGAGAGCCGGGTAGCACTGCCCAGCCAGGGGGCAAAGCAGGACGTGCAGGCCGAGAGCAACACGGTACTCATCCCCAGCAGAGACTCATACTGTGAGACGGTGCCAGTAGACGGCCCCCCCACATTCAGAGGCCAGTCGGTGAAGTACGTCTACAAACTGACGATTGGCTGCCAGCGTGTCAACTCCCCCATCAAACTCCTACGGGTGCCCTTCAGAGTGATGGTGCTCCACGgtATCCCCGAGCGTCCCTTCCCCCAGGACGAGGCCGTGGCCCCCTCGAACCCTTtcctggaggaagaggaaggagggCGGCGAGACTCGCGCCTGCTGGAGAAAGCCATGGACCTTCTCATGATCAACACCTCGCGCCGGAGTCCCAACCTGTTCAACATCACCAACGCCAGGGGGAAAGTGGGCAAGTTCTGTATCTTCAAGATCATGTACCGCCTGGGCGAGGACATCATCGGCACCTTCACCTTCTCGGAGGGGGATATCCCCTGCCTGCAGGAGGCCTGCCTGCACACGGCTGCCAGCCACTTCTCCCTGCCCGTGCCGCTCAACGCGACGCCCGGCTTCAGTACGGACATCGTGTCTCTGCGGTGGCGCCTGCACTTCGAGTTTGTGACGGCCCGCGAGCCCGTGGAGCCGGCCACGGTCTTGCAGAACGAGTCTGAGGTCACCGTGTGGACGGGGGCAGAGCATGTGGACGTTGACACCTTCAGCTGGGACTTACCCATCAAGATTCTGCCCACAAATCCCGCTCTGGCTTCCTACGTGTCTCAGTTCTCGGGGACCAATAGCATCCACATCTGAGCGGACTGAACCACTTCAGGGGAGAGGGCCACCTGGCCTGGACTCGGCCGTCTTCTcgtgagagacagggagagtgGGGCTGTCTTCTCTGGTACAGACTCTCTACTCCTGCCCGAGCCTCGGTTGCTTCTTAATTAACCTTCAAACTGGGCAAACTAAAAGCGTGGTTTTAATTCAGGAGTGTTGATCCGTCTCTGATCTGAAGACACCTGTCAAGCCGGCAGGACTGCATTCTTCAAGGACAAGAAGGGGAGTGAGGGCTGGTGATACAGGGTGATCTACTGATAGAGACAAGGCAACGTGTGCCGGCGCCCTGACGCCTGCCCTACCTCCCAGGGACTGAACCACCCACATTTCTCTCGTACCGCAGTTCTGCtgcttttaaagacaaaaaaaagctttgtttcCTTGTCATATTTCTTAATTCTCTTTATCTGcagggtttttgtttgtttgtttttgtatttatttctgtgtgtctATGAGCTCTGGATCAGAACTTCTGAAACAAAGTTATGCAGGCGCCCAGACAGGCCCCTGGTACTCCTCTCCCAAGATCAGTTGGCGGTGACCTGTGCCGAACTCGGGTCACCTTCCCGAGGAAACGGAGCGTTCCGTTTCTCCGGGAGCTGTTCACTGTGTGAAGAGGCTGACGCCACGGCAAACGGTGCTGTTTTTAACTACAAGCACAAGTATTCAGAGTAATGTAAATGCACAGATTATATCTCTTAAAACTATACAACCgatcaaaagtatttaaattgtaatccTTTTTACTGCTTCAGTGATGCACTCAATGATAATAGACACCACCGTTGTTTTCCATATTGGACATGTCTAATCAGTGGTTTCTGTCCACTGCCAATTATTTTGGGAGAGTTGTACCTACAATTGTTTTCTAGTGGCCGCACATCAGGTGGACAAGGTAAACCCACTCCTACAGTACAGAGTACAGAGTGCTGTGAGATCCTTTGGAATAAAAAGCAGTATATgcaaggtattattattattatcattattaatattattggtTAATTCTGTATGATGTGTTGGTTTCCTGAGGGGAAGcccaagtgtgtgtgtttaacccCTCAGTGGTCGGCGGCCTCAGTTGAGGTCCCCCGCTGTGCTGTGACTGCAGTGTTAATGGCAGGGCCCTGTGCCGACTGCCCTATACCTCCCAGGCTCCAGCACTGACCTCTGCATGCTGGACGGgactgtgtgtccagtgtgtgctgtgctggacTGGCTGCCTGCTATCTGCCCCAGACTGGGTGCTATTGCATTGAGAGTATATGTTTTCCAAATCTCATGTCtatcatgtttaataaaatgtttcaatctCACA

Function

GO: NA

KEGG:

id description
K20477 RGP1; RAB6A-GEF complex partner protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017496 True 2410 mRNA 0.54 8 7642275 7647260

Neighbor

gene id symbol gene type direction distance location
AMCG00017494 NA coding upstream 36076 7605288 ~ 7606199 (+)
AMCG00017491 pik3c3 coding upstream 167253 7459064 ~ 7475022 (+)
AMCG00017488 eif2ak3,LOC107683275,LOC106611393 coding upstream 362783 7240443 ~ 7279492 (+)
AMCG00017483 NA coding upstream 796169 6844975 ~ 6846106 (+)
AMCG00017484 NA coding upstream 797313 6844559 ~ 6844962 (+)
AMCG00017493 NA coding downstream 8123 7655383 ~ 7658125 (+)
AMCG00017495 NA coding downstream 16448 7663708 ~ 7667075 (+)
AMCG00017503 NA coding downstream 54854 7702114 ~ 7712194 (+)
AMCG00017510 NA coding downstream 183738 7830998 ~ 7835213 (+)
AMCG00017509 NA coding downstream 344855 7992115 ~ 8023128 (+)
G90857 NA non-coding upstream 15823 7624692 ~ 7626452 (+)
G90743 NA non-coding upstream 489531 7112416 ~ 7152744 (+)
G90733 NA non-coding upstream 631214 6974661 ~ 7011061 (+)
G90737 NA non-coding upstream 749665 6874967 ~ 6892610 (+)
G90738 NA non-coding upstream 758318 6883654 ~ 6883957 (+)
G90878 NA non-coding downstream 24883 7672143 ~ 7672373 (+)
G90879 NA non-coding downstream 30639 7677899 ~ 7678465 (+)
G90905 NA non-coding downstream 143199 7790459 ~ 7790658 (+)
G90915 NA non-coding downstream 203908 7851168 ~ 7851374 (+)
G90917 NA non-coding downstream 274932 7922192 ~ 7922640 (+)
AMCG00017486 NA other upstream 453632 6729738 ~ 7188643 (+)
AMCG00017446 NA other upstream 2954052 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 3035704 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 4946822 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 7430339 207586 ~ 211936 (+)
G90877 NA other downstream 20923 7668183 ~ 7671850 (+)
G90881 NA other downstream 45325 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 159118 7806378 ~ 7813639 (+)
G90955 NA other downstream 485108 8132368 ~ 8132854 (+)
AMCG00017526 paics,LOC107555752 other downstream 1040437 8687697 ~ 8700754 (+)

Expression


Co-expression Network