AMCG00017500 (gba2,LOC104958191,LOC104958190)


Basic Information

Item Value
gene id AMCG00017500
gene name gba2,LOC104958191,LOC104958190
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7625571 ~ 7639260 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017500
ATGGAGGCGGGGGACGAGGACTCCACGGCGGCGCTGATGAGCAGGTACCTGTCGGCGGCCCCGGGGAAGGGGGTGCCGGAGGAGGGCTGGCGGATCTGCCTGGCACACGAGTTCAAGGAGAAGAGGAAGCCCTTCCAGGCTCGGGACGTGTCGCTGGCCAACATGGTGGAGCATGTGGGGCTGGGAGTCAGGTATCTGAAGTGGTGGTACAGGAAGACTCGAGTGGAGAAGAAGGCTCCCTTCATAGACATGTTCCACGCCTTGCCCCTCAGACAGATATACGGTGTTCCTATGGGTGGGTTTGGAGGAGGTACTATCACACGGGGCTGGCGGGGGGAGTTCTGCAGATGGCAGCTTAACCCTGGAATGTACCACTACAAAACTGTCATTGCCAACCAGtttacAGTCTGTCTGCGTCGGGGGGGTCAGACCGTGTACCAGCAAGTGCTGTCAGTGGAGCGCCCCCCCACGCTGCAGGGCTGGAATTGGGGATACTGTGGCAGCTACGCCTTCTATCACGCCCTGTACCCCCGCGCCTGGACGGTCTACGACCTGCCGGGACAGAATGACTGTAGTCTCCCAGCAGCAGTCTTGGTGTGGGAAATTGAGAACAGGAATGACTTTGCCCTGGATGTCTCCATTATGTTCACCATGATCAATGGGTCCGGCCACAAGGATGACAAGAAGGGTGGCCACTGGAACGAGCCATTCCGTCTGGAGAAGGATGGCGAGGCGGTGTCTGGGGTCCTGCTGCACCACTGTACTGCCATCAACCCCTACACCCTGGCCATCGCAGCACGGGAACAGCCTGGCAGAGACATCAGTCACCAGACAGCTTTCAGTCCTCGGGGAACATGCCGTGGGCTGTGGGACGACCTCATCACAGATGGGCGACTGGATTCCCCCACAGGCCCTAGTCCCCCAACTCAGAAAGGAGAGAATGTGGGAGCAGCCCTAGCGGCTCGGTGTACAGTGGCTGCAATGGGACAAAACACTCTGGAGTTCAGTCTTGCCTGGGACATGCCCAAGATGACCTTCGGCTCTGGGGAAAAAGAGCATCTCAGGAGGTACACGCGTTTTTTTGGTAGCAGGGGAGACGCAGGGCAGGCGCTCAGTGTACATGCTCTCACGCAGTACCGGGACTGGGAGAGACGCATCAAAGACTGGCAGAGACCCATCCTACAGGACAGGGCCCTGCCTGGCTGGTATAAATCCGCTCTGTTCAATGAGCTGTATTTCCTGGCAGATGGGGGCACGGTGTGGGTGGAGCTGCCCCCAGACTGCGACATCACTGGGGGGCTCCACAGTGAGCAGGGGGGGCTGCCAGCACAGCCGCCCATCCTCAAAGAATACGGCCGCTTCGCCTACTTGGAAGGTCAGGAGTACCGGATGTACAACACCTATGACGTTCACTTCTATGCCTCCTTTGCCCTCATCATGCTGTGGCCTAAGCTGGCCCTCAGTCTGCAGTACGACATGGCTGGCTGTGTGGTGAGGGAGGACTGCACTCAGAGGCTGCACTTGATGAGCGGTCTCGTCTCCCCAGCCAAGACCAGGAACGTCGTACCACACGACATTGGAGACCCAGACGACGAGCCGTGGCAGAGAGTCAACGCCTACCTGATTCACGACACCGCCGACTGGAAGGACCTCAACCTGAAGTTCGTGCTGCACGTGTACAGAGACTTCTACCTCACCGCAGATCGGCAGTACCTCCACGACATGTGGCCCATCTGTCAAGCTGTGATGGAGTCTGAACTGAAGTTCGACAAAGACGGTGACGGCCTCATCGAAAACTCTGGCTACGCTGACCAGACCTACGACGGCTGGGTTGTCAGTGGAGCCAGtgCGTACTGTGGGGGCCTGTGGATAGCGGCGGTGTGTGTGATGTGCAAGATGGCCAGGCTGCTGGACTGTGAGTCGGTCTATCAGCGCTACAGAGACCTGCTGGAGAGGGGCAGTGCTGCCTTCGACAAGCTGCTGTGGAATGGTCAGTATTACAACTACGACAGCAGCGGCCGACCTTTTTCCAACAGCATTATGTCGGACCAGTGTGCTGGGCAGTGGTTCCTCCGGGCGTCTGGACTGGGTGAAGGGGACTTCCAGGCATTCCCGACAGAGAAGGTGCGGCAGGCCCTCCGCACAGTGTTTGATCTGAATGTGATGCAGTTTGCTGGGGGAAAGATGGGCGCTGTGAATGGGATGCGGCCGGAGGGTGTGCCGGACTGCTCCAGTGTTCAGTCGGACGAGGTGTGGGTCGGAGTGGTGTACGGCCTGGCTGCCACTATGATCCATGAGGGGATGGTGGAGGAGGGTATGCGGGCAGCGGAGGGGTGTTACCGCACCGTGTGGGAGCGACTCGGCATGGCGTTCCAAACCCCCGAGGCCTACTGCGAGAGGGGCATCTTCCGCTCGCTCGCCTACATGCGCCCGCTCAGTATCTGGGCCATGCAGCTGGCACTGGAGCGCAGGGCGGCCCAGCCCGAGGGATCGGAGGCCGCGGAGACTGTCCCACAGTCCACGCACACGGTTTCCAGCACGGAGACTGTAGAGACCAGACTGAACACAGGGACTGACTCCAACACTGTCCCACCAAAAGAGACTGAGCCAGAGACTCGAAACGGTGTCCCCCACACAGATGCCGTACCCCCTAACTCTTCTGTCCAGTCTAGTGACCAGGATCTAGTGTCCAGCAAAGAGGGGGACAGCTGCACCTCTGCACAGTGA

Function

symbol description
gba2 Enables beta-glucosidase activity. Acts upstream of or within axonogenesis and central nervous system development. Located in plasma membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 46. Orthologous to human GBA2 (glucosylceramidase beta 2).

NR:

description
PREDICTED: non-lysosomal glucosylceramidase

GO: NA

KEGG:

id description
K17108 GBA2; non-lysosomal glucosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017500 True 2727 mRNA 0.59 17 7625571 7639260

Neighbor

gene id symbol gene type direction distance location
AMCG00017499 NA coding downstream 31489 7587951 ~ 7594082 (-)
AMCG00017492 NA coding downstream 133784 7489082 ~ 7491787 (-)
AMCG00017490 NA coding downstream 171998 7451642 ~ 7453573 (-)
AMCG00017489 NA coding downstream 325626 7292856 ~ 7299945 (-)
AMCG00017487 rpia,LOC107568642,LOC107695020,LOC107671341,LOC102776079 coding downstream 403826 7210358 ~ 7221745 (-)
AMCG00017498 NA coding upstream 8386 7647646 ~ 7650108 (-)
AMCG00017501 NA coding upstream 18807 7658067 ~ 7660662 (-)
AMCG00017502 NA coding upstream 21586 7660846 ~ 7661833 (-)
AMCG00017504 NA coding upstream 116397 7755657 ~ 7776355 (-)
AMCG00017505 usp46,LOC106533691 coding upstream 141792 7781052 ~ 7793599 (-)
G90817 NA non-coding downstream 301464 7323730 ~ 7324107 (-)
G90805 NA non-coding downstream 343094 7266067 ~ 7282477 (-)
G90796 NA non-coding downstream 398728 7221828 ~ 7226843 (-)
G90783 NA non-coding downstream 419710 7205620 ~ 7205861 (-)
G90762 NA non-coding downstream 501397 7065885 ~ 7124174 (-)
G90885 NA non-coding upstream 54323 7693583 ~ 7694005 (-)
G90908 NA non-coding upstream 133958 7773218 ~ 7784195 (-)
G90938 NA non-coding upstream 189238 7828498 ~ 7830609 (-)
G90948 NA non-coding upstream 375135 8014395 ~ 8023105 (-)
G90956 NA non-coding upstream 493135 8132395 ~ 8132854 (-)
G90746 NA other downstream 436923 6733235 ~ 7188648 (-)
G90749 NA other downstream 512390 7112436 ~ 7113181 (-)
G90715 fat4,LOC106611628,LOC106604622 other downstream 1236533 6387252 ~ 6389038 (-)
G90502 NA other downstream 2402524 5222473 ~ 5223047 (-)
G90501 NA other downstream 2404550 5158384 ~ 5221021 (-)
AMCG00017497 NA other upstream 28764 7668024 ~ 7679350 (-)
G90937 NA other upstream 191625 7830885 ~ 7832592 (-)
G90939 LOC105903575 other upstream 352877 7992137 ~ 7996595 (-)
AMCG00017520 NA other upstream 834230 8473490 ~ 8514955 (-)
AMCG00017531 NA other upstream 1093500 8732760 ~ 8748743 (-)

Expression


Co-expression Network