AMCG00017508


Basic Information

Item Value
gene id AMCG00017508
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7806378 ~ 7813639 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017508
tctttctttcattcctcAGACTGGTGTGCTAGGACGGCGCTCCTATCATGATgAGGGAACCACATGCAGGCAGAATCTGTGTCTGTGAAGATGGACGGACCTGaaaaagtgaAATGGGATTCACATCGCCCTGCTTACACCGATGACTGGAGCCACTCAAAGATGGTCATCTGGAAGCACCTGGTTCACGCTAGTGCCAGTTCATGTACTGAACTGATGTGGAGaTCTGAGAAATGGAGACTGAAGACTGAAAACATGGcgtgagaaataataaaacttaatttataCAACTTCtgtccaatgtttttttttttaatcctcttGCTGTCTGGGTGCAGTTCTTACAATCTATACAATACACTCATTTTATAGGGGTTGCCACAAAGTTGTACAACTACACATTTCTGCTAAGAAGCTGCATCTTTAAATGGATTCAACAGTTCCTTTGGGAATTAAGGAAGTGTTACTCCAAGTCTCTAGTAGTTTCTCTTCCCAGCAATTGAAACTCCTCTGGCATATgttactgatgtttttttaaactagaATACTACATATACAGTCCCAGCCTAAACCCACCTTTTGTTGCAAGTATTTTTActgaaacaatataaacaatctGAATTAATGGTACCGAATATGATCTGCTTTCATATATTACATTGCTGTAATTCAGTGATTTTTAGATTGGTCTCGCTTTCTCTTAGTATAtggtaatattaattaaacctTTTGTAATGAATGTTTACAATAGGAGGTCATGATTTTGACTATTTGTAGAATTACAAAAAACCTAGAGCTGTTACTGATGCAAGGAGTATACCCACTCCATATTCATTCTTTGTAAATAGTCTGTTataatgtacataattaaaagTAGTTTCTTAGTACATATTGCCTGTAGAACTGTATAGAGATCCTAAAGAGGGATCGGACTTTGGGTCTCGTGTTATTTAATAGTCTGGTCTGTCCCATGTTCGTGGAGCTGTACTGTTAAATCTGTATATGGCTGAATCATGCTAGGGCATGTTTAATGAGTTGGCTATTGGCAGATCCGTAAACTGGATTAATTTTCtgttctggaaaataaattagttgCATGCAAAGATTTGACATACAAATGAAAGATGATTTTTCATACCAATTCCATAACTAGTCTAAATAGGCTTGTTTAGATTCGctgtgatttaatgtattgtaggttttagtgtgtattttgtttttttgacacAAGTGGCTAATCGTGAGATGCCAACAGCTAAATATCCACTGTGGGTTGTAACTTCTTAAACAAATATGATAACCTTTATAGAACGATGCACACCTGATTTAAAGTAGTTCCAACTTGTTGCTGGATAATTACAAATCTGTGGCTTTTGACTGAATTTAATATAAACCCTCACTTAATTAATGCTTTGTAATTGGCATTTCTGAAAACACCCCtatcatattttgaaaaatatttgtcGCCTTAAATGCCTTTGTTCTACAAGATTTGTTGCAAAACAGGAATGGTTCCAAACATAAtcccatttttcttttcaaagggAGAAAAGATTATTATGTGTTTTGGAAAGCTCTAGCtgaaaacaatttacaatagTGTGGATTATAAATGGTGAGGGGACAGAATGTGCAATactgcaattgtttatttgtgttctatCACATTGTTACGTGgaacacattaaatattgaacattGTGTCATTACAGTATTAGATAACTCTAATGTGGACTACACTGACTTTATAGTGAGCAGTTTTAATTGTACCCAATTCAGaacatatttacttaaatgATATTTCATGATGCAGTGtgtttaaacaggaaaatgtgATCCTAGTTGTCAACATTCTACATCAGAATATTCtacaatttgtaaatgtatttgcatggatgttttacattcatacaaacttttacttttaacacttatgattataattatacataattttgttttaaatcatgttgTCAGCATGTTTCTCTTGCTCTACTTGGGTTCTGTTCTCACTGCAGAGGGGTGCAGGGTTATGCTTTGGATTAGTAGGCTTAACCCAGGCTAGAAAAGCCAGTGTGAAAGGGACTTTATTTTTGCTTGGCTAACTGTAGGGCTAAAGCTGTGCATTTCTGCCATGTTACTGTAATGACCACTTTATGTTCATTGTAGAGGCAATAAAACCAATAGAATTAATCTAGCAATTTCTCTACATTGTTATcgtacaataaaataataaaggccTACTATTTATATAAGACAAATGCAAGACTTGGTCCCTAAAGCTGAAACCCTATTGCCACACACCAGCTGACCTTTAATGTCAGACTAGTTTTTATGCAGTTTCATTGACAATATATTAGTGAAAAGataatattttctttagttATATAACTGAACATGTAATGTGAAAAAAGCTTAATGCTATTCATAAACTCAATCCCAtcaaacagaaaatagaaagaaagaaagaaactccCACAGTGGCACGCTGGTTGAGTTTACCCCTTGGGCCAGAAAGCCAGTATCAATAGCAGCAGAAAACCTTTTCACCTTTTACTGCATTCCAATGCATTCATGTAAGCACACAAAGTACCTCCCTGAGCTTCTGCAGTGAGAAGACAAAAGCATTGTTGAGATAAACAACATGGCTGTACTGAACAACTAATGTGGAACACAAATCAGGCTTAAGAATATACAGtgtttacaattatataatttctcaGTTATACTACTCAAAACTGATGTGTTCAATTAACCTCTAAATAACACAGTTTGCCGCTTGACAAATCAACAGCAAATCTCTTAATTCTAAATTTTAACAAAGTATGTAGAACACTGTGTGAAATTACTAACTTGGACATTTCTTCTGCAAAAGAGTCACTTTTGGCCTTTGCAGTTGCAGTTCTCAGCAATATAacaattagttgttttttttacatcatttaGCCCTAAATCTTCAACGAGAGTACATTTTAAAGATCATTAGCACCCCCATTGCCTTTGGCAAACATTTTATCCACACTTTGAAGTACGGCTGGACTTCAAAAACCTCTCATCCAACAAACCActgtaaatctaaataaaaacaataagttCTTGACCTACAATGGGTGGATTTGAAGCATAATGCTCATTAACATGCTGTAGTAAACAGCAATTATAAGAATAATGAAGATGAGCAAGATACCCTCTGCACTAAACCTCTTGGCTTCTACAGCTTTCTTAGTTTTTGCTCTTTGTTCCACAGTAGGAGGTGTATGACCTAGATCTCTGTTATCATCAACTGActgctattttattttccctctgaTAAAAGAGACAGTAGTTAATGTCAATTGAGACACCAGCAATATTGTGCTATAATTAATGCAgtctgttaaattaaaatgctgaaacaaaTTCTGTGTTTTGATGGTTCAATGATGTTTCAATTTGAACCAAAATTTAGTTTGCAGTTTTAAACATGAATCATTTCTCGATGATTAAACGAAAAATTGTTTTGAGACACTATGACCTCATAAGGCTTAAAAACACTGAGAGGATGCTAATCCAAACGGGTCCATTCTCTCTGAAACTCAAGGCGCAAAACTATAACACTTTTGCAAAGCACAAAGAGATTAAAGATAACTCTAAAATGACACCAATTTCACTGTTTGTTATTCATGACAGAGGTTAATGTGGAAGCTAATAGAAGCCATATTATACTGTTGCATGAGTAAGTTAACCTGGAGGCCTCGTGACAATAATGAAAGCCATTATGTGCAATCCAGTACAAAAGTACTAATAAGCCTGCatcaatttacacaatataaagAATATTCAGTGTAATAGAGCTCAAAGGCAGtctaaaatgtaaagaaaaacatggtAATACAACGGCAAAACATTGCATCTCACAAAATATgactgcattcgttatgttgtgtttattttattgcatttatctTCCAATTGAATATGCAAATGTGATGTTGagctttgtttaattgttttcattgaagGCTTTATCTCAGATTGGATTGATTAATtataactgaaaattaaaaaataaggcaATGCATTAAACTATTCCCATTTTTCAATAATGATGatgtatattaatgaaaaaatacacaaacaagcaTCCCGATTCTGCCATGGTGAAAGtcaatatgtataatttaatgacAAATATAAACTGATACAGCACACAGGACTATAAATGTTCTTGGGATTGTGACAAAGTCTTTTTTGGAACATACAGTGATATTTATAGGCCTCAATCTGTTTACATAAAATGTCCTTATTTCTGTAAAACTGGGCATTGGTTCATTTTGCTGTACAGCGTGGTTAAAACGTCTCTGTAGTTTTCATGTTGTTATGCCTGACGGGGGTTGGTtgtgtaataaaaaagaaaccataTGTGTCCCTCATTTTGACTATTCTCATGTTTATAGCTGATTCATTTGCTGTAAAGTGAAAATATTGTAAcaggaaacaattaaaatgtacctAAATATGTAAGAGAAAAGGAAG
>TU113414
CATGCTTTgctctttctttcattcctcAGACTGGTGTGCTAGGACGGCGCTCCTATCATGATgAGGGAACCACATGCAGGCAGAATCTGTGTCTGTGAAGATGGACGGACCTGaaaaagtgaAATGGGATTCACATCGCCCTGCTTACACCGATGACTGGAGCCACTCAAAGTGATGCAGTGAATGGAATTTGAATCCGTGCTACATTGTGAATGGAGATGTGCAGTTTGTGGATGACCTGAAGATGGTCATCTGGAAGCACCTGGTTCACGCTAGTGCCAGTTCATGTACTGAACTGATGTGGAGaTCTGAGAAATGGAGACTGAAGACTGAAAACATGGcgtgagaaataataaaacttaatttataCAACTTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017508 True 4515 mRNA 0.34 5 7806388 7813639
TU113414 False 376 lncRNA 0.45 6 7806378 7809418

Neighbor

gene id symbol gene type direction distance location
AMCG00017503 NA coding upstream 94184 7702114 ~ 7712194 (+)
AMCG00017495 NA coding upstream 139303 7663708 ~ 7667075 (+)
AMCG00017493 NA coding upstream 148253 7655383 ~ 7658125 (+)
AMCG00017496 NA coding upstream 159118 7642275 ~ 7647260 (+)
AMCG00017494 NA coding upstream 200179 7605288 ~ 7606199 (+)
AMCG00017510 NA coding downstream 17359 7830998 ~ 7835213 (+)
AMCG00017509 NA coding downstream 178476 7992115 ~ 8023128 (+)
AMCG00017511 NA coding downstream 362091 8175730 ~ 8177002 (+)
AMCG00017514 pdgfra coding downstream 378148 8191787 ~ 8212616 (+)
AMCG00017515 NA coding downstream 434320 8247959 ~ 8282506 (+)
G90905 NA non-coding upstream 15720 7790459 ~ 7790658 (+)
G90879 NA non-coding upstream 127913 7677899 ~ 7678465 (+)
G90878 NA non-coding upstream 134005 7672143 ~ 7672373 (+)
G90857 NA non-coding upstream 179926 7624692 ~ 7626452 (+)
G90743 NA non-coding upstream 653634 7112416 ~ 7152744 (+)
G90915 NA non-coding downstream 37529 7851168 ~ 7851374 (+)
G90917 NA non-coding downstream 108553 7922192 ~ 7922640 (+)
G90919 NA non-coding downstream 149404 7963043 ~ 7963276 (+)
G90921 NA non-coding downstream 152681 7966320 ~ 7966608 (+)
G90922 NA non-coding downstream 154481 7968120 ~ 7968328 (+)
G90881 NA other upstream 113031 7692585 ~ 7693347 (+)
G90877 NA other upstream 134528 7668183 ~ 7671850 (+)
AMCG00017486 NA other upstream 617735 6729738 ~ 7188643 (+)
AMCG00017446 NA other upstream 3118155 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 3199807 4592802 ~ 4606571 (+)
G90955 NA other downstream 318729 8132368 ~ 8132854 (+)
AMCG00017526 paics,LOC107555752 other downstream 874058 8687697 ~ 8700754 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other downstream 938074 8751713 ~ 8764903 (+)
G91281 LOC103376870 other downstream 1706134 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 4065975 11879614 ~ 11880499 (+)

Expression


Co-expression Network