AMCG00017514 (pdgfra)


Basic Information

Item Value
gene id AMCG00017514
gene name pdgfra
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8191787 ~ 8212616 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017514
GGGGAAGGATGGACTGTTACATTGAATCAATTACGGGGCGCTGTGCTTGAAGCGCATTACTGAGCGCCGCGGTGGAGGCAGAGAGAACAGGACCCATATGCTGCTCCTCACTGGACTCTCTGGGATTGTACTGGGCGGATTACCACTGGAAAGACAAGAGTTTGCGGGGAGAGGGATATTGGATCTAACGCAGCATCCATGACATTTTGAATCCACCCATTGTTTTCTTGCAGGGGAAACAGAAAAGGAATTCACAGttgaTGAACTAAAGCTTCACCATGATGGAGGTCTTCTTGAAGATACACCTCGCACTCGGGATTGCATTGTATGGGATTTCTTCAGTTAATTGCCTAAAGTCAATGCCAGTTATCACTCCTGCCCAAGAGGAGATGGTTGTTCTGCCGCACACCCTGCTCACTTTAAACTGCACAGGAGAGGATGATGTGTACTGGGAAGGCCCAGAGCCAGAGAATTATGTGGAGTTCACTATAGACTTCAAATCCACTTTATTGATCGCAGACGTGTCGGCTTCCAACACAGGCTTTTACAGCTGCTCCTACAGAGCTGCGAGCCCAGAGGACGCAGAGCTGAGCACCAGAGAAGTCTACATATTTGTACCTGaTCCAACAGTTCCTTTTGTCCCTGAGAACCCCAACGCTGGTGCCAACGCTGATTTTACATTAATACCCTGCCGTGTTACCGACCCCAACTCCCACGTCATACTGAGGAACCAGCAGACGGGCCTGGAGGTCTCCACTCTGTATGACAACCAAAGAGGCTTCATTGGCATCTTCTCTAGTGGGACCTATGTTTGTGAAACCACTGCAGACGGCAGGAAGCACAGCAGCGTACAGTATATAGTTGGCCATGACAGAGAGAGCAGTGATTTCCATGTTGAATTCGAGGTGAGCCAGTTGGCAGTGAAGGCTGGGGATccctttaatttaatctgtgttGCCCCCATGGGTGAAATGTACGAGCAACACTGGCTGCACCCCAGAAAACAGGCTGCCAGAGCAGTACAGACGAAGCAGTCCGTGGGCGGTCGTGTGCACTACACCCTGAGCACCCCCCAGGCCTCCGTCCAGGACAGCGGGGTTTATGAGTGCTCTGTGACAAACATCCTGACGCACGAGACAATAGTAAAGAAAGCAACGGTCTTAGTTTACGAGAGAGGTTTCATCCGTTTGGATCCTATGTTTGGACGGGTGGAGTTTGCAGACCTTCACGCCACTAAGGAATTTATAGTCAATATAAATGCGTATCCAGAACCTAAAGTGACTTGGCTAAAGGACAATGTTGCAATCaaagacaaaatggaaaatccAAGAAGTACGACAACCAATATTGATGGAAATCGGTATCAAAGCATCCTGGTAGTCCCTCAGGCAACTCTGGAAGATAtctcCTCAGATCCAGTTCACCAGGAGCTGGCGCCGGTGATTTCTCCCAGTAGGGAGGAGATGGTGGTCCAGCTCCATTCGCCTTTCAAACTGAGCTGTTCTGGTGAGAGGGAGGTTGTCTGGGATACCCCTCTGGAACAGGGTGAATTTcaagaggagaaagaggaggataACAGTGGCCTGTTTGTCACTTCGATCAGTGTGCAGAATGCCACCGGCCTCCATACCGGCTACTACACCTGCAACTACATGGGCGATAACGACAACTCTGATGATTCTGAGCTCACCTCCATTTACATTTACGTCCCAGATCCGAATGTTCCATTTATTCCCTCACAAACACCCTACGGTAACCACGTTCTTCAGTCCCCCGATGAAATGGAGATCAGGTGCCAAGTCTCCGACCCAAATGCCAACGTCACCCTcttcaacacagacacacaaaagaaTGTACCATGCCAGTATGACCCCAAAATAGGAGCCATTGGATTCTTCCATGCGGGAACCTATGTCTGCAAAACCTCTGTTAATGGTGAAGAATTCTTAAGTGAGGAATACATCGTTCATGGCTGGTTAGAGTCTTCTGAACTTCAAGTTGACTTAGAGGTTACAAAGACTGCCATGTTGGTGGGGGACACTATAACTGTCACTTGTGTGACCAAAGGCAGTGAGATGCTGGAAGACTATTGGAAATACCCTGGGAAAATGTCTAACAGAGGGGTGAAGactgtaaaagaaaacaggaaggaCGTGGAAATCCGCTACACTCTCACTATCAAAGAGGCCTCACTGAAAGACACTGGAGTCTATGAGTGCTCCATCATGGACATCATGACCAATCAGGTCAAAATGAAGGAAGTGAACATCACAGTATATGAGAAAGGATTCATAACTCTGCACCCCATGTTTTCACAAATGGAATATGCTTCTCTCGATGAAGTAAAGGAATTCAGAGTTGACTTTGAGGCTTACCCTGAGCCTAAGGTGACCTGGTTAAAAGATGGTGTTGTATTCAAAGAGGGGAATCCAGAAGTAAGCAGTAGCCTGGACCGAAGCAGTGCAACCagCTACACAAGTATTTTGAAGCTGATCCGTGCAAAAGAAGAGGACAACGGCAACTACACAATCAGAGTGAGCAATGGGGACGACACTCCGACCTACACCTTTTCAATGCAGGTGAAAGTCCCAGCTTTCATAGTCGACCTAATGGATCTTCACCATGGCTCTGTCAGCGGACAGGCTGTTGTGTGCATCGCAGGGGGGCTGCCGACTCCTGAAGTGGAGTGGTTTATTTGCAAGAATATAAAACACTGCTCCAATGATACATCGCAGTGGACATTGCTTCCACTGAATTCCACCGATATTACTGTGGAAAACCATATGGAGGAGAACAAGCTCGAGAGCCATGTCTTATTTGGAAAAGTAGAGGACACGTTAGCTGTCAGATGTCGGGCGAAGAATGAACTTGGTGCAGTTGCCAGAGAAGTGAAGTTGGTGTCATACGCTTTACGGTCCGAGTTGACTGTGGCTGCTGCTGTGCTGGTCCTGCTTGTCATTGTGATCATCTCGCTCATTGTGCTGGTTGTCATTTGGAAGCAGaaaCCCAGGTATGAAATTAGATGGCGGGTGATCGAGTCTATCAGCCCAGATGGTCACGAATACATTTACGTAGACCCCATGCAGTTGCCCTATGACTCTAGATGGGAGTTTCCTCGGGATGGCCTAGTACTAGGACCCATTTACATCATCACGGAATATTGCTTTTATGGAGACCTTGTGAATTATTTGCACAAAAACAGGGAGAATTTCCTCAATCGACACCCTGAGAAGGTGAAGAAGGATCTGGATATCTTTGGGATTAACCCAACAGATGAAAGCACAAGAAGCTATGTCATCCTGTCCTTTGGAAACCAAGGAGACTATATGGACATGAAACAAGCTGACACAACTCAGTATGTGCCTATGCTGGAGATGAAGGACGGCTCAAAATATTCTGATATCCAGAGGTCCAGCTATGACCATCCACCTTCACATAAACAGAAGTCACTGACTGAAACTGAAGTCAGCCATTTGCTGTCAGATGACAACAGTGAAGGCCTCAGCTTTATGGATTTGTTGAGTTTCACATACCAGGTTGCAAGAGGGATGGAGTTCCTGGCATCTAAGAATAACTACGAGAAAGTAAACCACGACTTCCTCAAGAGCGACCACCCGGCCGTGACCCGCATGCGAACCGAGAGTGACGATGCGTACATCGGAATCACCTACAAGAACAATGACAAGCTGAAGGACCGGGAGAGCGGTTTCGACGAGCAGAGGCTCAGCTCTGACAGCGGATACATCATCCCCCTGCCAGACCTGGACCCCGCTTCGGACGAGGACTACGGCAAGAGGAACAGGCACAGTTCCCAAACATCTGACGAGAGTGCCATTGAGACTGGCTCCAATAGCTCCACCTTTATGAAGAGGGAGGGTGACACCGTTGAAGACATTGACATGATGGATGATATAACAATGGAATCGGGAGACATGGTGGAGGACAGCTTCTTGTAAAGGTCCCTAAGCTATGAAGGAAAGGGCATCTCTGAGACATAACCAAAAGGACTTCCTTCAGCCAAAAAGAATAACCACTTCACTGCATTGAGGTTGATGCAAAAGAGACTGCAGCAGTGGTGATGCAGAAAAGCTAAGCTAAGAAGGGAACAAGAGCAGGAGCCAAGGGACAGTGTGTGAACTCATTTCAAGCTCACATTTTAAGGCGAGTGATGACCTTTGGAACTCTTCAATGTTTACTGTGGGACACTATGCACATAAGGATGAAGGAGGGAAACAgctgaaaggaaattaaatgttcatatttttcatgGGCATTCAAATATAGAATTATGACCAGGATTTACTgtctgtgcaaaaaaaaaaaaaagaaccaaatATACATCAGGATCCAACAACTTGCATGGTAGCATCTCTGCAGTCAGTATAAACGTATTGCCTCTTTTATTTGGAACCACTACAGCtgttatttaaagcaaattaacGTAGGAAAAAATCAGTAAGTAAAAGGTACGGGGTTTGCATTAAAATCAACCAAATCCACTCAAACAGAATGGACAAGCGCTAACcgtgtattgtttattgtcgTCTAGTTTCTACTTTCATGGCATACCTTCAAACACTCGTCAGTTCCACGAGGAGCATTACTTTGATAAAGCACAACAACTGGTGATATTGTCGTCTTTGTGGTATGTTTTTAGCAGCTAAATAAGTGCAGTggtcaaatttatttttttacttactatctcatataaaatatatataatttgcaaattTCTAGGAGTTGGGTGTTCTTAGGTGAGCTAAATACTGCATCAGAATTGGTCTCTGCTGACTTATATTGATTAAATAAGCTTAATGCTAGACCAATCAAAATTATGACCAACCTGCCAACctgtgaattgcaaattacacagTCGTAtcgcattttgatttataaatagtataaagtggcttctaacaataaattaaactgtgatttgtactttgtgattcatgggtaggtcatagttttgatttggtcaagCCCTGATTGTGGCAACAAATATACTAGCATCTTATTTCCCTGTTTGTTCTGTTCAGAAGGGAAACAAATGGCAAAATATGACACTAGACCAAGTTAATGTAGGAGTGATATGCATTTGTCAAGCCAGTTAAGACAAAGTCTTCCACAAAATAAGAAGTATCTTCTTAAACTCTCATTTACTTATGATAAAGGTCCAGTCTTCACTTTTAAATGATCTACaacatgtttaaacataatcaatatgtttttatctgAAGCCAAGTGAAACCCAAGagttatattaatgtatatatcttggaaaactaaatATAGGGGTTCATTTATGTCTGTTggtctgcatttaaaaatgtaatgttttgttcatTGTTGTGCAAAATTTGTAATtacttattgtttttaaaaaaaagaaacgtttAAATGACTCATGGGTTCAAATACTGTGCCCAAAAAAGAAACTTACAACTATTGCATTTATgcaaacactgcttttatttcacAAGAAGAAAGTCTTCAAAAAgccattgcaatttattgccaaATAAATTCTGTTTTGCTATATGTAAGTAACAGGGATCTTTTATGAACCTGTATTCAACTTGCATGATTTTTCCTGTGCAAGTTAGTGGAGgtttgtaatacaaatattgtgtgAACAGACTTCAGGCTTATTCTGTCTTGATTACCGTGTAATGTGAATTCTTGTGGTACAGCTTTATAATCTTTATAAAGTGCAGCCACAGGAACATTTTCCTAAATAATTTTAATGGGATTCCAAGTTACAGAAATGTTAATAATCGACAATCAATGAGATTAATAAATTGGACCCAAAGCCATCAATTACATTCCCTGTGGACTTGCTCTAATGGGTATGAGCACATGTCAGCTATTATAGGgtattacagaagaaaaatggaCAATCGTGCATATTGGACTGATACATTTCTTAAGTGTCTCAGTGAAAATGATGTTATACTTCAATTTTGCAAACAATTTAGGAATATGGTCTTTTGAGCATTATGTATAGTTCTACCACTGTACTTCAGGAAGAAAGACCAATCTAATGATGTCACAGCAGGAAAGATACGCTTTTTCTTGAGTCAACTGAAATAGCTATAATTAGATGTTcggtgtattttatttgaaaaggttaTCAGTATGGTGATAAGCGAATAGGTCTACTGACTTCATCACCTGAATTCTAGCTTCTTACATGAATCCATTCCTAAACAGAAGTACAAAGCTGCCTAAGACACCCAACTTCACTTAAAAAGTGGGCCCTACGAGTCTGAGATGTGGCATAAACGTGTACAGAAATTTATTTTGCCTATTGAAAGACATTAGATGAATAAACCATGATGTTATACATcaatctgtatatatgtatcttttATAGTCTCTTTAAATACTCTATAAACATCTCTGTCTAGCTATGTCACTGCCTTTTTGTTACACATTTGACTGTGATGTACTCCACAGGCACGTAAAACtgttgcacttttgtatttcccccttttttgttttttaaaaaaaaatatttcactttgGAAAAGTATGTTTTCATTGTGACAGTGTTGTGAATGTTGGGGAGGAGGTAGGCATGGCAGTGGTTGTGAAGTATTGTTAATAAAGGTacaattaattgttattatagACAGTTACCCAGTTACAGATGTTATCCCTTTGTTTAAATAACCAGTATGACAATTCAGATGTtctatatttcaataaatgatataaaatgtaatgcatatgtTGGTAAATGTTCATTTAATCTTGTATATTGAATATGTGGTTCTCCACAATCAACACTAACTACATTGGGAACAGGATTTCAGCACTGTTAATGAGCAGTAAGGTTGTACTGGAAAAGAATAAAAGCAGCACTGACAGGCTGCAGCTTCCAGCAATTGATAAAATCTGGGTCTGCCCAGGAATAAGTAGCATAGAACAGCCTCTTGTGCGAATATTGCAAGACTCTTGAGAATGAAAGAACCCCATTTGATTGTATGAAGTTGTGAAGACATGCAATAGTGATTTAATTCCTGTTTTGCAAATATATCTGGATGTTTTTATAAAG

Function

symbol description
pdgfra Predicted to enable platelet-derived growth factor alpha-receptor activity and platelet-derived growth factor binding activity. Acts upstream of or within several processes, including circulatory system development; embryonic neurocranium morphogenesis; and neural crest cell migration. Predicted to be located in Golgi apparatus and cilium. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; choroidal fissure; head; mesoderm; and neural crest. Human ortholog(s) of this gene implicated in hematologic cancer (multiple); hypereosinophilic syndrome; and pancreatic cancer. Orthologous to human PDGFRA (platelet derived growth factor receptor alpha).

NR:

description
PREDICTED: platelet-derived growth factor receptor alpha

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K04363 PDGFRA, CD140A; platelet-derived growth factor receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017514 True 7060 mRNA 0.42 23 8191787 8212616

Neighbor

gene id symbol gene type direction distance location
AMCG00017511 NA coding upstream 14785 8175730 ~ 8177002 (+)
AMCG00017509 NA coding upstream 168659 7992115 ~ 8023128 (+)
AMCG00017510 NA coding upstream 356574 7830998 ~ 7835213 (+)
AMCG00017503 NA coding upstream 479593 7702114 ~ 7712194 (+)
AMCG00017495 NA coding upstream 524712 7663708 ~ 7667075 (+)
AMCG00017515 NA coding downstream 35343 8247959 ~ 8282506 (+)
AMCG00017518 NA coding downstream 147564 8360180 ~ 8376658 (+)
AMCG00017517 tmem165,LOC106584122 coding downstream 164208 8376824 ~ 8381670 (+)
AMCG00017525 NA coding downstream 347516 8560132 ~ 8565811 (+)
AMCG00017522 exoc1,LOC106560275 coding downstream 355051 8567667 ~ 8586671 (+)
G90924 NA non-coding upstream 201827 7989696 ~ 7989960 (+)
G90922 NA non-coding upstream 223459 7968120 ~ 7968328 (+)
G90921 NA non-coding upstream 225179 7966320 ~ 7966608 (+)
G90919 NA non-coding upstream 228511 7963043 ~ 7963276 (+)
G90917 NA non-coding upstream 269147 7922192 ~ 7922640 (+)
G90991 NA non-coding downstream 16699 8229315 ~ 8229576 (+)
G91004 NA non-coding downstream 73676 8286292 ~ 8286728 (+)
G91104 NA non-coding downstream 519752 8732368 ~ 8732632 (+)
G91128 NA non-coding downstream 571251 8783867 ~ 8784089 (+)
G91135 NA non-coding downstream 607097 8819713 ~ 8824837 (+)
G90955 NA other upstream 58933 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 378148 7806378 ~ 7813639 (+)
G90881 NA other upstream 498440 7692585 ~ 7693347 (+)
G90877 NA other upstream 519937 7668183 ~ 7671850 (+)
AMCG00017486 NA other upstream 1003144 6729738 ~ 7188643 (+)
AMCG00017526 paics,LOC107555752 other downstream 475081 8687697 ~ 8700754 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other downstream 539097 8751713 ~ 8764903 (+)
G91281 LOC103376870 other downstream 1307157 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3666998 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4984279 13196895 ~ 13259760 (+)

Expression


Co-expression Network