AMCG00017515


Basic Information

Item Value
gene id AMCG00017515
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8247959 ~ 8282506 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017515
CAAATGAGCGCTGTTTGTAAGAGCGCAGCATCTCTAGCGGCGGACAGATCCGTGTCAGAGAGATACGCAGACACAGCTACATCAATGGCATGTTAACGATGGACTACAACTGGGTTTTGTGTATTACCTTGGTGCTGTCAAACTTCCAGCAAGGCCTGACAAAGCCAGTGATTACACCTGACCAATCACAATTGGTGGTCCTAAAGGGTAACTCTGTCAAACTTTGTTGTCGTGATAATTCAAAGGTGAATTGGTATCTGGAAACCCCCCCAGGAAGTCGGCAAAGTCAAAGATCAACTCTAGAAGATGGCACTTATTGTCTAACTTTTTCCAGGGCAGACGCTATGCACAGGGGGAGGTATATTTGTGAAAATGAGACTTTGGCACAAAGCTCCATCTATGTTTTTGTAAAAgACAATGAAAATCTTTTTCACAAATCAATGGTGAAGAAAATTGTGACTAAGGCTGGCCAAAACTCCAGTATTCGCTGCCTTGTGACGGACCCCGATGTTGTGGATTTGAAGCTCGAGACATGCGGGGGCCAGCCGCTACCCCCGGACCTGGACTTCAGTGCCAGTGTGGAGAAAGGCATCGTCATTAAGAACGTGCAAGTCGCCTTCCAAGGGTGCTACGTGTGCACGGCACAGCACGGAGGGAAGAGGGTCAGATCGGATGAGTACCAATTAACCGTAAGAAATGTTCCTGCTCACCCTCCAGACATTTTTTTggatacaaacaaaaaagtgattcTGACTAAAGGCCAGAAGTTTGAAGTCACTTGCAGGAGTGTCAATGTGAACCATAACTTAAGTTTGAAGTGGATTGCTCCTGTAAACATGgcTCCTGTTATACCTGCTTCCACGTATACGCCAGGCCGTTTTGAGATGACGGCAGTCCTAAAGATTGATCAAGTAAAGGTTCAGGATTCAGGGATTTATCAATGTGAAGCCACAAATGAGAAGGGCATCTCTATGGCTTCCATTGAACTTGAGGTTTTCGATGAAGGATTCATTAACAATGCAACATCAGGAAACAACACGGTATATGTGAAAGCTGGTGAAAGCCTAACTCTGAGTGTAGACTTCGAGGCATACCCAAGGCCTGAGAAGTTCTACTGGATGTACCTGAATGAAACTTTGCAGAACACCTCCGACCATGTCATTGTCACAGAAGACACTGGCTATAGGTACACCAGCAAACTTAAACTTGTGCGCCTAAAGGGATCAGAAGGAGGGATTTACACATTTTGCACATCTAATTCATATGTCTCCTGGAATCAAATGTTTGCAGTTCACGTTCTTATTAAACCAGAAATTATTTCTCAAGAAGGGCCAAACAATGGACAACTGCGCTGTGTGGCAGCAGGGTATCCTGCTCCTGAAATATCTTGGTATTATTGTGAGCAGCCGCATGTACGATGCTCTAAGCTGCCCAATGCCACAAAGGAAGATATGGAAGTTGGCACTCTCACTTTATCCCAGCCAGACTTTGGCAGGATAGAAATTGAAAGCACGCTGAACATTAGCAGACTGAATTTCCAAAATGTGGAATGCATGGCTCAGATTAGCGATGAGCAGGATTATCACATCTTCAGCGTTAACgAGAGAAGAGTGGCCCATGAACTCTTCACCCCTTTACTGACTGGGTTTGTTGTGGCAGCAGCTGTGCTTTGTCTCATCCTGGTGGTCCTCGCTTACAAGTACATACAGATCTATTTGAACTTCTCCAGTAAGTTCTCGCACAGAGAGGAGCTTCACTGTCACTCCCTGCGGCTCAACTCGGTtggcagcagcacagcctcCACACAGCCGCTCCTGGTGGGCGATGACGTGTTCATTGAAGAAGAGCTGAGACAGCACAGAGCTTGAGCGCGGCACAGTGCTGCTGGGTGAAGATCAAAACCACTGGACGTCCCAGGAGACCATTTCAAAAGTGCCTAAGAGAAGGTGATTTGTACCCACTGAGAAAAGTACACTGTAAAGTTCAGGTAGTTTTTGACTGTCAACATGGGGGTATTGACCGTGCcgatttatattgttattattattattttcaatcccccattttgtttataaagaCAATCAATCAGCAACAGGCCTATtggtgatattttattttgtgacatttatAAAGCTGTATGCCTCACATAAGCTTATAGGAATTACTTTAACAAACTGGATTGTttagattgtttgttttgaaaaacacccgtatttcaaaactaaaatactaaaatataatctattttcaGTATCAAGTCCCAACCAAACATTCCCAGGACGTGCAGGAATGGTTTGAGTTAAGGAGTCATGTTGTACATATCAGGCTTTGTGGTGTGAAACAAGAATTTTGCAATAATGTGCATGTccaattttgtaattaatatttcagtttgaatgtAGCAGAGCACTTTGGATTCATTAGCTGGACAATATCCTTCAGGTGTTGTAAAGTATATGTTGAATatgcatatgtttattttagtttttcatgtcttattttttaaataaccataGAATGGTACAAACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017515 True 2531 mRNA 0.43 11 8247959 8282506

Neighbor

gene id symbol gene type direction distance location
AMCG00017514 pdgfra coding upstream 35343 8191787 ~ 8212616 (+)
AMCG00017511 NA coding upstream 70957 8175730 ~ 8177002 (+)
AMCG00017509 NA coding upstream 224831 7992115 ~ 8023128 (+)
AMCG00017510 NA coding upstream 412746 7830998 ~ 7835213 (+)
AMCG00017503 NA coding upstream 535765 7702114 ~ 7712194 (+)
AMCG00017518 NA coding downstream 77674 8360180 ~ 8376658 (+)
AMCG00017517 tmem165,LOC106584122 coding downstream 94318 8376824 ~ 8381670 (+)
AMCG00017525 NA coding downstream 277626 8560132 ~ 8565811 (+)
AMCG00017522 exoc1,LOC106560275 coding downstream 285161 8567667 ~ 8586671 (+)
AMCG00017521 NA coding downstream 308663 8591169 ~ 8601655 (+)
G90991 NA non-coding upstream 18383 8229315 ~ 8229576 (+)
G90924 NA non-coding upstream 257999 7989696 ~ 7989960 (+)
G90922 NA non-coding upstream 279631 7968120 ~ 7968328 (+)
G90921 NA non-coding upstream 281351 7966320 ~ 7966608 (+)
G90919 NA non-coding upstream 284683 7963043 ~ 7963276 (+)
G91004 NA non-coding downstream 3786 8286292 ~ 8286728 (+)
G91104 NA non-coding downstream 449862 8732368 ~ 8732632 (+)
G91128 NA non-coding downstream 501361 8783867 ~ 8784089 (+)
G91135 NA non-coding downstream 537207 8819713 ~ 8824837 (+)
G91151 NA non-coding downstream 556141 8838647 ~ 8841038 (+)
G90955 NA other upstream 115105 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 434320 7806378 ~ 7813639 (+)
G90881 NA other upstream 554612 7692585 ~ 7693347 (+)
G90877 NA other upstream 576109 7668183 ~ 7671850 (+)
AMCG00017486 NA other upstream 1059316 6729738 ~ 7188643 (+)
AMCG00017526 paics,LOC107555752 other downstream 405191 8687697 ~ 8700754 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other downstream 469207 8751713 ~ 8764903 (+)
G91281 LOC103376870 other downstream 1237267 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3597108 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4914389 13196895 ~ 13259760 (+)

Expression


Co-expression Network