AMCG00017516


Basic Information

Item Value
gene id AMCG00017516
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8329147 ~ 8349988 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017516
GCCGTGCATCACTGACTCCAAGGGACTGCAAGTGAGAGGCGCATTTGAACGGATGCACAACGCCTTTTTTCCTCATAACGACAAACAATACTATATCAAGTCAGTATCATTTGCTAAACCACCAATTTAACGTGATCTACGGGAATCCAAGGATATACATTGTTGGAAGGAGAGCTGATTCATCATTTGTGGGGATGTACGCTTAAGGAGAGCTGATTTACAAGAAGGAAATAATTACACCTTGATGCTGGGAAGTCAGTGCTCTTGTGCTCGAAGATGACCAGGGCATGGGTTTTTATTTGCTGCATGGGGGTTGTTTTTGGAGCAAATGTTGTGACAGgtaTAGTCTTGAGGTATATGCCTGATCCACCAAAACTTAGTATTACAGATCAggtacacaaaataaatgcttcagaGACATTGGAAATAACATGCAGGGGACAGCAACAATTAGGATGGACATGGCCTCGCAACCAGAGCGGGCCAGAACAGACCCTGACAGTGACTGACTGCAGTGGCTCTGGTCTTTTTTGTAAGACCCTCATCCTTACAAAGGCAACAGCCAACAACACTGGAGAATACAGGTGTTCCTATAAGGATCTGAAAGCCGAAGATGGAAAAACATCAGCCAGCGTCTATGTCTTTGTCCAAGACTACAGAGCACCATTTGTCAGCTCTTCCTCtaattttgaaattgtgttCATACCGGAGAGTATTCCTGTGGTTATTCCCTGCTTAGGATCAATAGAGCATCTCAATGTCACACTGTATGCGAACTATCCCAAAAAAGAGTTTAATCCTGATGGGAAGACCATTTACTGGGACAGCCGGAGAGGGTTCATTATCCCCAGCCAGTATATCAGTTATGCAGGAGTTGTTTTTTGCCAAACAGTTATAGAAAATGATACATACCAGTCTTCTATGTTCATAGTTGCAGTTGTAGGATACAGAATTCATAAGCTCTCTCTGACCCCTCAACATGAAGTGAAACTGGCAGTGGGAGAAAGGTTTTCACTAAACTGCACTGCTACCACAGAGCATAACGTGGGGATTGATTTTCAGTGGAAGTACCCGGCTTGGAAAGAAAACCGGACAGAGATAAAGCCCCATAAGAATAAATTTGTCGATTACCTAGAACTTTCAAGCACCttgattattgaaaatgtaaaactaaatgATAATGGCGAGTATATATGCACAGCATCCAGTGGACGAATGGAAAAGACTGGCAGTGTGATTCTAACTGTCTATGAAAAACCATTCATTGCCATCGATGAAAGATCTGATTCTGTGGTTGAGGCGGAGGTAGGAGATCGACTTGCCAGGCTTTCTGTTAAATTCCACGCATATCCTCAACCAGAAGTGAAATgGTATAAGAATGGACTGCCAATTTCCAGGGATGAACCTCGATACAGGAGTAAAGGTGGTAACACCCTGAATATCCATGATGTATCTGAGAGGGATGCGGCCAATTACACTGTTGTGCTGAGAAATCCAATGACAAGAGAGGAGCAACGACATACGTTCCAGCTGCTTGTTAATGTTCCCCCACAGATTTATGAGAAGGAGGTGGCTCGCGATAGTGATATCTACATATATGGTAGCAGCCCAGAACTGCGGTGCACAGCTCGCGGGATCCCATCTCCAGTCGACATTCAGTGGCAGTGGATGCTAGTGGAGGACTGTCCTGGCTACTACCACCGAGAAGATTATCAGTCACCTTTCCAGTTTCATGAATGTCAGAAGTGGAGAAACATCACAGACAACACAGGCAAGAATCCCATTGACAGGATTGTGACCCAGCCTGACACTGATGTAGTGACCAAGACTGTGAGCACACTTAAGATTCGGACAGCACATGTTCCTGCTATGTACAGATGTTTGGCATCTAATAAAGTTGGTCAAGATGAGAGACTGATCTTCTTTCATGTCACACGAGGTCTGGAACTCAATGTGCTGCCTACTGCTGAGCCCATAGAAAGGGACAATGTAGTTCTACAATGCAAGGCAGACAGACTAATCTATGGAAACCTAAAGTGGTTCAGGCTGGGAAAGAGCCCCCTTAACACAGGAACCACTGTGCAACCTTGCAAACACTTCAACTTGGCCGAGGAGTCCCTGTGCCAGGCCACTCTCTCTGAGCCGAGAGGCACAAACGTCACTCTGGAGTTGAGCTTGCACAACATGTCCCACAAAGATCAGGGACCATACGTGTGCCAGGTGGAGAACATCAAAACGAAGGAGAAGACCTGCCTCTTTAAGCAGCTCTCTCTGAAAGCTCTTCAGGTACCCAGAATATTAAAAAACCTCACTGGCCAAATTATCCAAATCAGTGAAACTATCGAACTAGCCTGCAACGTGAGTGGAACCCCCACCCCTAATGTGACCTGgatcaaaaacaacaagacgCTAATGGAGGACTCTGGTATTGTTTTCACACAGCAGAACAGGACTCTGACCATCCAGCGTGTGAAGAAGGAAGACAGTGGCATCTACACCTGTCTGGCCTGCAATGACCAGGGCTGTGACTCTACACAtgcctctctctcagtggaAGGGGCAGTTGAGAAGACCAATGTGGAGCTCATTGTCCCTATTGGCTCCGTGGTGGTTGCTATGTTCTTCTGGTTACTTCTCGTCTTCGTCATCCGAACCAGAAAGAGGCCGAGTGGAGGGGAACTAAAGACAGGCTACCTTTCAATCATTGTTGATTCCGACGAACTGCCCATGGATGAGAAGTGTGAGCGGCTGACTTACGATGCCAGCAAGTGGGAATTCCCTCGAGACAGGCTTAAACTAGGGCAGCCCCTGGGCCGTGGAGCCTTTGGCCAAGTAGTGGAGGCTGCTGCCTTCGGTATTGAAAAAGCAGCCACTTGCACAACAGTCGCTGTGAAGATGCTCAAAGAGGGAGCAACGTCCAGCGAATACAGGGCGTTGCTGTCAGAGCTGAAGATTCTCATTCATATTGGACATCACCTCAATGTGGTGAACTTGCTGGGGGCTTGCACCAAACCTGGAGGTCCTTTGATGGTTATTGTGGAATACTGCAAGTATGGGAACCTCTCCAGCTACTTAAAAAGCAAAAGAGGGGAGTACAGCCCTTACAAGAGAAAGGCCTTGAAATCAAAGAAGACCAGAAGCCAGATCTTGACTGGGCTGGGATATGAGAACCAGCACATTATCGATGCCACCAGGAGGGAGAGCCCTGTCAGTTCTGGCTTTGTTGAAGACAGATCTCTAAATGACCTGGATGAGGATGAAGCAACAGAAAACCCTGACCAGACCCTACTAACAATGGAGGACCTTATAAGTTACAGTTTCCAGGTAGCTAAGGGAATGGAGTTCTTGTCTTCTCGCAAGTGTATCCACAGGGACCTCGCTGCTCGCAATATCCTTTTGTCAGAAAACAATGTGGTCAAAATCTGTGATTTTGGACTGGCACGGGATGTCTACAAAGACCCTGACTACGTTCGGAAAGGAGATGCTCGGCTCCCTCTGAAGTGGATGGCCCCAGAAACCATTTTTGACCGTGTTTACACAACACAAAGTGATGTCTGGTCGTTCGGGGTTCTGCTCTGGGAAATCTTCTCATTAGGAGCATCCCCTTACCCCGGAGTGGGCATTGATGAGTTTTTCTGTAGAAGATTAAAGGAAGGGACAAGAATGAGGGCACCTGATTACGCCACCcctgaaatATATCAAACCATGCTGGACTGCTGGCTTGACAAACCCAAGGAAAGACCCACGTTCACAGAATTAGTAGCACATTTAGGAAACTTGCTTCAAGAAAGTGCCGAACAGGACGGAAAAGACTATATCCCTCTCACGTCAGTCCACTTAGAGGAGGATTCCGGTCTCTCGCTGCCCACGTCACCTGTTTCCTGTACAGCGGAGGACGAGTACAGCGATCCCAAATTCCACTATGACAATGCTCCCGGGTTCAGGTTTGCACAGCAGAGTAGCAGGACAAGTCGGCCAGTGAGTGTGAAAACGTTTGAGGACGTGCCCATCGAACACAGTGTTGTAACTGACAATCAGACAGACAGTGGAATGATCCTTTCATCAGAGGAATTTAAAAATTTGGATACTCAGCCTACTCAAACACCGCCTTTTAGTCCCATGGCTCACCGCAAAAGCAAGGAGTCCGTGGCTTCTGAATCATCCAACCAGACCAGTGGCTATCAATCAGGATATCACTCTGATGACACCGACACCCCCCTGTACGCCAATGAGGAAATGGAGCTGTTGCAAAAGCAGGAAGTTCCTCAGACCTGCTGTAAGATGTCGGCACAGTACAGCCCTATCGTGCGCTACAGTGCGCCACCTGTGTAGCAGGACATTGGACTCGCCGGGGGTTCAACACACAAAGGACGCTGACACGGGCGGTCCCAGCCAAAGAGATCTGCTACTGTTGGGTGTCTATTCACTGTGTCTCCACATGAGCCCATTCCTGTCTTCCACATCTGGACACATATTGTGAAGGACAAGATGATTGAGGAGAATTGAACTGCAGTTGTACACCTCATGGACACAATCCTGTGGATTATCAACCCTACACAACAGCAGGGCCCTGTCCACCTTCAGTATGTGATGATAAATGTGCGATTCGGATGCCTGCATCATGGAATCtgctataaaaaacaatatcttACTACTTTGATACGTAAAGCTTTTTGTTCTCTACCTGTATCTTTCTCTAAGAAACTTTACAGTAGGCAACactgtaattgttattttattttatttggggtgtgtgtgtaggggggtaTTTTTTCTATAGAAATGCAGTTTTCATAGATTTTAATAAGTCATTTTCAGATAAAGTGCTTAAAACTGTTTGGCACGTATTTATagcaatatgtttttgtttgttgttttacaaatgtaatatatggAAGGAAAATTATATGCAGcgttgttttataaatgtacaattttcCAAGTGCCTGTAAATGAAATaaggtttgttttcacagtttacAAAAAGCGGATGTATTAAAGGGCCGAAATGATTAAAGAGACATGTCTGACGTATAAGACACGAAGCGgatgggaaatgtttttttatgtatttttgaatgtaaAGTCAGATTTTGCCAATGGTGGTTTAAATGAAGTATAATCTTAcaattatgttgtatttgtaaaaaaatttaacagtgttattattatgcaaaaaGTCCCTTAACACAACCCAGATTTGCATAGTTTTCTCGGAGTACTTCATTTATATTgaacagaactttttttttacatgaactgtaataaataaaattagttttataaaataaatttacTTGCTTATTTtgtcaacattttaaacacacgATTTCACTTTGCTATCtacaaaacaacataattatGGGTGCGTAACATAACGGTCTTATAACATGTACTTGTAGAGcagtaat

Function

GO: NA

KEGG:

id description
K05098 KDR, VEGFR2, CD309; kinase insert domain protein receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017516 True 5411 mRNA 0.45 30 8329147 8349988

Neighbor

gene id symbol gene type direction distance location
AMCG00017512 chic2,LOC101486940,LOC103353160,LOC107714214,LOC107562985,LOC102236523 coding downstream 167703 8142440 ~ 8161444 (-)
AMCG00017513 NA coding downstream 286693 8023656 ~ 8042454 (-)
AMCG00017506 NA coding downstream 337707 7989793 ~ 7991440 (-)
AMCG00017507 NA coding downstream 477926 7843646 ~ 7851221 (-)
AMCG00017505 usp46,LOC106533691 coding downstream 535548 7781052 ~ 7793599 (-)
AMCG00017519 clocka,clock,LOC107701480 coding upstream 37074 8387062 ~ 8416479 (-)
AMCG00017524 NA coding upstream 257071 8607059 ~ 8627186 (-)
AMCG00017529 NA coding upstream 313662 8663650 ~ 8677813 (-)
AMCG00017530 ppat,LOC106560282 coding upstream 329825 8679813 ~ 8694359 (-)
AMCG00017528 NA coding upstream 351890 8701878 ~ 8730713 (-)
G91005 NA non-coding downstream 42030 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 99586 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 164242 8164654 ~ 8164905 (-)
G90964 NA non-coding downstream 167034 8161535 ~ 8162113 (-)
G90956 NA non-coding downstream 196293 8132395 ~ 8132854 (-)
G91064 NA non-coding upstream 253633 8603621 ~ 8605626 (-)
G91294 NA non-coding upstream 1244942 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 1282657 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 1312576 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 1325558 9675546 ~ 9675779 (-)
G90939 LOC105903575 other downstream 332552 7992137 ~ 7996595 (-)
G90937 NA other downstream 496555 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 649797 7668024 ~ 7679350 (-)
G90746 NA other downstream 1140499 6733235 ~ 7188648 (-)
AMCG00017520 NA other upstream 123502 8473490 ~ 8514955 (-)
AMCG00017531 NA other upstream 382772 8732760 ~ 8748743 (-)
G91119 NA other upstream 405300 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 2011312 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 3154036 11504024 ~ 11506820 (-)

Expression


Co-expression Network