AMCG00017519 (clocka,clock,LOC107701480)


Basic Information

Item Value
gene id AMCG00017519
gene name clocka,clock,LOC107701480
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8387062 ~ 8416479 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017519
CATTTTTGTAATCCTTTCCTGTTTTGTAGACTTGAGAGAAGAAAACATAACTGGAAGTCACCCACTGAAGATCCTGCAGAAACGCACTGCTGTTTAACCATTATCCTCTgagctttttttaaaaaaatttttTTGGTCATGTGGTGTTTGCACATCCGAACACGTCGAAAATGGCAGCTTCCTGAAGACCTAAGATCTCTTATATCTTGCTGATATAAAATCTTCTTACCACATCAGTTTTTTAATATAGGTTGGGACTTTGCAGCATCTGGCctggtttccttttttccccaccaaCAGTACTTCACATTACAGACAATCTGTATTGGAGgtACAGTTACAAATGTCTACCTCACGATTAAAGTGTGATTTACTACAACTGCTACCCTGAACAAGTTagaaaatgacctccagcgtaGACCGGGATGACAGTAGCATTTTTGATGGATTAATGGAAGAAGATGACAAAGATAAAGCTAAAAGGGTTTCCAGGAACAAATCTGAGAAGAAACGCAGAGATCAGTTCAATGTCCTCATCAAAGAGCTGGGCTCCATGCTCCCGGGGAATACCCGGAAGATGGACAAATCCACAATCCTGCAGAAAAGCATCGATTTCCTGCGCAAGCACAAAGAAATTGCAGCACAGTCAGAGTCGAGTGAAATCCGACAAGACTGGAAGCCTCCATTCCTCAGTAATGAGGAGTTTACACAATTAATGCTAGAGGCGCTAGATGGCTTCTTCCTAGCAATAATGACAGATGgaaatataatatatgtttCAGAGAGTGTTACTTCCTTACTTGAACATTTACCTtcgGATCTTCTGGATCAGAATCTGTTAAATTTCCTCCCATTGGGGGAGCATTCAGAGGTGTATAAAGTTCTTTCTAGCCAGATGCTGGAAGGAGAGACTCTGACTCCAGAGTATTTAAAGAcaaaaaACCAGTTAGAATTCTGTTGCCATATGCTACGAGGAACAATAGATCCCAAGGAACCCCCTGTTTATGAGTATGTGAAATTCATAGGAAATTTCAAGTCTTTGAATAATGtgcCTACGTCCACACGAAATGGCTTTGAAGGAGTTATACAAAGGTCATTAAGGCCTTCATATGAAGAAAGAGTCTGCTTCATAGCAACTGTAAGGTTAGCTAAACCCCAGTTTATCAAGGAAATGTGCACAGTGGAAGAACCTAATGAAGAATTCACCTCAAGGCATAGCTTGGAGtggaagtttttgtttttggatcacagGGCTCCTCCAATAATCGGTTACTTGCCATTTGAGGTTCTTGGCACATCTGGCTACGATTACTACCATGTGGATGACCTGGAAACCTTAGCAAAATGCCATGAACATTTAATGCAGTATGGGAAAGGAAAATCCTGTTACTACAGATTCCTCACCAAAGGGCAACAGTGGATTTGGCTCCAGACTCACTACTACATTACCTACCACCAGTGGAACTCCAGACCAGAATTCATTGTctgtacacacactgtagtAAGCTACGCTGAAGTGAGGGCAGAGCAACGGCGAGAGCTTGGGATTGAAGAGTGTACTCCAGAAATTGCTGCTGATAAGAGCCAGGACTCGGGGTCAGATTCCCAGCTGAACACAGTCAGTCTGAAAGAAGCTCTGGAGAGATTTGATCACAGCAGGACTCCCTCTCCGTCCTCCAGGAGCTCTCGGAAGTCCTCCTCTCACACTGCTGTGTCAGACCCCACCTCAACACCAACTAAGCTACAAACCGAAACAAGTACCCCACCCCGACAGTCTATGGCATCAGCTATTGAAATGACCTCTCAGAGGAGATCGTCCATAAGCAGTCAAGTTAGTCAGCAATCAATGAGTTCTCAAAATACAGGCCAGACTATGGGCCAGCCTATGATAACGCAACAGCCATCCACCTTACAGATTCAACCCAGCATGTCGCAGCCCATGTTACAGTTCTCTGCTCAGCTCGGCGCTATGCAGCACCTTAAAGACCAGCTGGAGCAGAGGACAAGGATGATCGAGGCCAACATCCAGAGACAGCAGGAGGAGTTACGCAAGATTCAGGAGCAGCTCCAGATGGTTCAGGGACAGGGCCTGCAGCAGGGCCAGCAGTCATTACGGACAGCACACAGCCAGCAGACCTCCCTGCCCAGTCAGACTCAGAACGCACTCCCACCCTCACTCTATAACACTATGATGATCTCTCAACCTGGATCAGCTAATGTGGTTCAGATTGCATCCAGTTTGCCACAAAACACCAATCAGAGTGGCACTGTGGCCACTTTCACTCAGGACAGACAGATACGaCTTCTCGATTGCTTCACGGCAACCAGTCCACCCAGCTCATCCTGCAGGCTGCGTTCCCATTGCAGCAACAGAACACTTTCACTCAAGCACACCaccagcaacagcagcagcagcagcagcagcagcagcagctctccGGACACAGGACCGACAGCATGTCTGATCCCTCCAGTGTGCAGCCCCAGTAACCCTGTCCTGCTCTGTCAGATGTTTGTACTGAGCGTAAGAGCAGTCTAAGAGGCTTGAAATGCAGTATTCAGCATGCACCTCCGCAGTTCCTTAGAGGTGCTACATGTTCACAAGCAATGGATCACTACAGTGGATGGTTACCCAGGATGCAACGGGAGGCAGGGCAGCCTCGAGCAGCAAGCCGGCTGTGTTCACACGGCAACACATTGGGAGGCGCTGCAGAGAGAACGCACCGAGACCTGACTCCTGGCGGCGGGAGAGCAGCACCCAGGTTCTGACCGTTTCCCTGTCCTTCTCTTACTCTTCgcaattgcattttcaagcagttgttttaatttatgcagAGTGttcaagcagaaaaaaaaacctgctgcctctttttattttgtggctgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatga

Function

symbol description
clocka Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Contributes to DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including photoperiodism; primitive hemopoiesis; and regulation of gene expression. Located in chromatin. Part of transcription regulator complex. Is expressed in brain; head; ovary; and photoreceptor cell. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CLOCK (clock circadian regulator).
clock Enables E-box binding activity and histone acetyltransferase activity. Involved in several processes, including DNA damage checkpoint signaling; cellular response to ionizing radiation; and regulation of gene expression. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in chromosome; cytosol; and nucleoplasm. Part of transcription regulator complex. Implicated in Alzheimer's disease.

NR:

description
circadian locomoter output cycles protein kaput

GO:

id name namespace
GO:0009266 response to temperature stimulus biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0009648 photoperiodism biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02223 CLOCK, KAT13D; circadian locomoter output cycles kaput protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017519 True 2934 mRNA 0.46 20 8387062 8416479

Neighbor

gene id symbol gene type direction distance location
AMCG00017516 NA coding downstream 37074 8329147 ~ 8349988 (-)
AMCG00017512 chic2,LOC101486940,LOC103353160,LOC107714214,LOC107562985,LOC102236523 coding downstream 225618 8142440 ~ 8161444 (-)
AMCG00017513 NA coding downstream 344608 8023656 ~ 8042454 (-)
AMCG00017506 NA coding downstream 395622 7989793 ~ 7991440 (-)
AMCG00017507 NA coding downstream 535841 7843646 ~ 7851221 (-)
AMCG00017524 NA coding upstream 190580 8607059 ~ 8627186 (-)
AMCG00017529 NA coding upstream 247171 8663650 ~ 8677813 (-)
AMCG00017530 ppat,LOC106560282 coding upstream 263334 8679813 ~ 8694359 (-)
AMCG00017528 NA coding upstream 285399 8701878 ~ 8730713 (-)
AMCG00017532 NA coding upstream 355730 8772209 ~ 8780221 (-)
G91016 NA non-coding downstream 5392 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 99945 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 157501 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 222157 8164654 ~ 8164905 (-)
G90964 NA non-coding downstream 224949 8161535 ~ 8162113 (-)
G91064 NA non-coding upstream 187142 8603621 ~ 8605626 (-)
G91294 NA non-coding upstream 1178451 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 1216166 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 1246085 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 1259067 9675546 ~ 9675779 (-)
G90939 LOC105903575 other downstream 390467 7992137 ~ 7996595 (-)
G90937 NA other downstream 554470 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 707712 7668024 ~ 7679350 (-)
G90746 NA other downstream 1198414 6733235 ~ 7188648 (-)
AMCG00017520 NA other upstream 57011 8473490 ~ 8514955 (-)
AMCG00017531 NA other upstream 316281 8732760 ~ 8748743 (-)
G91119 NA other upstream 338809 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1944821 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 3087545 11504024 ~ 11506820 (-)

Expression


Co-expression Network