AMCG00017521


Basic Information

Item Value
gene id AMCG00017521
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8591169 ~ 8601655 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017521
ctTGGCGGAAGTGCCCTGCTACACAGGCGGGGTTTACAGTTGCGCTCATGGCAGCAGTAACATCGttatctctctctgtttcctGCAAcagtcaaaatgttttttacttGCTGTGTTGCTAATGCGTTTCCGACAGGGATTCAACGCGAAACCCACAGGCGTTTCATGTCACTGTATCCGGCCATTAGAGGCGCCTGTTGATGACAACGTGCgtcgtgtgtttgtgtgttcatgtgtttgaTCACTCACTGTACGGCATCCTCAGTTACGGCCAATTACGGTTTATAGAATCGCAGCTTGAGTGTATTATATCGCGCTGTTTAAGCGATGTCGGATTAATTACATCAAACATGCTCCgtattatacattattagcATGCAAAATACTATTGTGACTCACTACAAGCAGTAGAAGGGAACGGATGTGTGTTTTAGGATGGAGACGGCTCTGCAGGGGCTGCTGCAGGCAGCGGCCGCCCTCCACCCCGACAGGCCGGCGGTGCGATTTgacggcggcggcggcggcgcgTCTCAGAGCTACCGAGAGCTGCTGTCTCTTGCCAAGCAGCTCACCAGCCTACTGCACATGCGCTGCCCCTTGCAGGATAACGTCGCTATTGGgttatacactcacacagagttAAATCTTGCCAGCTGGATTTTGggTATTCTCCAGATTCCTGGCGCCTATGTCCCCATTGACCCTGATGCTCCAGCACATCTGTCCGCCGGAGTTATGCAGCAGTGCAATCTAGAGTATGTCCTCACTCAGAGCAGTCTGGTACAGAGCTTCCGGGATTCGTTTTCTGCTTATATGCACTTTGAAGCCAGTGAAGTGTTGCCAAACCAGAACTTGACACTGGTGaagataaaaaggaaaatagcaAACAATCCACAAACGGGAAAAGCACTGAATCAAAAGGTCAGCGACAAAGGACGAGAGAAAGAACAAGCAGTGGATGAAGCAGTTCAATGTCGGACATTTACTCAGGAAATGGGCGGTAGAGGCCCTGGGTGTCTCGCCTATGTTCTGCACACTTCGGGAACAACAGGACTTCCCAAAATAGTCCGAGTGCCTCACAAGTGTATAGTGCCAAATATTGTGCACCTCAGGTCTCTTTTTCAGGTAACGCCACAAGACGTTGTATTCATGGCTTCccctttgacctttgacccctcCGTGGTCGAGCTGTTTGTTGCCTTGTCGTCTGGAGCCTCTCTGTTGCTTGTACCGACAGTTGTTAAAATGGTGCCAAATAAACTAGCTGAAGTTCTCTTCAAACACCACAGAGTGTCAATCATGCAGGCCACACCAACCCTGCTCAAACGATTTGGCAGCAGTTTGCTCCACTCAACAGTGCTGTCAGCTGCCACCCCATTGCGTGTTTTAGCGCTTGGTGGGGAAGCTTTCCCGTCCCTTGCTCTTCTCAGGAGCTGGAGGGAAGACGGGAACCAAACCCAATTTTTTAATCTCTATGGTATTACTGAAGTGTCTTGCTGGGCAACATGTTACAAGATACCAGAAGAAGCTATCAGCGGTAACTCTGTtgtgtgtaaTTCTGTACCCTTGGGAATGCCATTGCTTGAAACCACTGTAGAAGTAAGAGACCAAAATGGTTCTGTGATCACTCAAGGGGAAGGACAGGTATTTATAGGAGGGACGGAGAGAgtgtgttttcttggtgacGAAACAGTCTTGGCACCAGGCCTGATGCGTGACACGGGCGATTGGGCTGAACTGCGAGAATCCCACATGTACTACATGGGCCGCAAGGACCGCGTCATCAAACGGCACGGCAAACTGCTCAATCTGGAAACACTGCAGTTGGCCGTGGAGAGTCTGAGCCAGGTCGAGGCTTGTGCAGTGTCTCACTATAAAGAGCACAGGCTCCTGGTTTTTGTGGTGGCTGCTTCTCAAAGTCCAGACATCGACAAGGTCATTCTTCACAGCCTCTCCAAACGCATGCCTGTCCACGGCATCCCAGACACACTGGTATGGGTTGAAGCCCTACCCCTCACATCCCACGGAAAAGTAAACATGGAAGAGTTGTTGAAGTTTTATGAAGGGCAAAGAGCAGCTAAAATGTCACAGGCAGGTCTGAATGGAAGAAAGGACTTGTGGGAACGCTTGCAAACACTGTGGAAGGATGTTCTTAGTCTGCCAGAAGATGCTGTGGTTCCTTCAGaatctgtctttttgttttgtgggggAGACTCACTCAAATCTCTCAGGCTTTCAGAGGAAATTGAGATCGCTGTGGGAAGGAGCACTCCTGGACTACTGGAGGTGATCCTGAGCGGCTCCTTTTCTGATCTCTATAACCACACTGCCAGATTGCTGTTCCCTGAAAAAGATGAAGAAACtgtccaaaaaacaaatgtgaaaagacAACTGATTGAGACCTCTTTACCCACGTATACAAAGGTTCCGAAAAAGGAGGAAACTCAGATTCAAATCAATTTTTTAAGCTTCACGGTGGTGAGAAAAGGTGGTGAGAGGTTAATAGTGGGTGCTGTACTACACAACCCCGCCTGTGAAGGAACTAGTGGAAACATTAACACCTTGAAGAAAGCCGAGGCCAGACATGATTTAACTGCAGGTCACAGCAAAGAAGGACGAAATGGGACAAAGAGGGTGGAAGCCCAGCCTGCTGAGAAGCCCGTCTCTCAGAGAGAGGACGCGTCCTTAAAACCGAAGGTGAGGTGGAAGTCGGACACTGGGAAGTGTGTGGATGCATCTCCAGTCCTGCTGCTGCCTGGAGACGGAGAGACACCGGCCACAGTTTACATCGGCTCTCACTCCCACAGGATGCAGGCCATTGACACGGGCTCGGGTGAGCTGCGGTGGGAGCGGGTGCTGGGAGGCAGAATCGAGGCTTCAGCAGCTGTGACCAAATGTGGCAAATTTGTTGTTGTAGGTTGTTATGATGGCGTGGTTTATTTTCTAAGAGCGGATTCAGGAGAGAGCTACTGGATGTTCAGTACTGAGGACTCGGTGAAAAGCAGTCCCTGTGTGGACCTCCTGACCGGGCTGGTGTTCGCAGGATCACATGATGGTCACATCTACGCTTTAAATACAGAGGCCAAGCAGTGTGTTTGGAAGAGACACTGTGGCGGAGGCGGCGTTTTCTCTTCCCCTTGTTTACAGGATTCTCCCAGGCGGCTGTATGTAGCGACACTGGGATCCCAGTTTCTTGCAATAAATCCAGACAATGGAGACACTGTCTGGAAACACTCCAGTGACAagcctttcttttcttctccgcGCTGCTCCCACGAGTCTGTCTGCGTCGGCTCTGTCGATGGAAACATACACTGCTTTAGCCACGCCGGAGAAAAgCTTTGGCAGTTTCCCACCAGTGGCCCCGTCTTCTCATCTCCATGCATTACGACGGGCTGCCCAGCTGATCAGAAACTGGTTTGTGGATCCCATGACAACTCTGTCTACTGCCTGAGTAGCAGAGGCAGCCTGCTTTGGAGGTTTGAAACCAGTGGGAAGGTTTTCTCCAGCCCGTTCAGTTTTGGTGGTCCTGACTGGGGTGGCCAGGCACTGGTGGCTGTGGCTTCCACAGATGGCACGGTGTGGATTATTGATGTAGAGAGCGGGACATTAAAGACTTCATACTCTCTACCAGGAGAAGTTTTCTCTTCCCCGGTTGTGTGGGAAAGGAGCTTGTGTGTGGGCTGTAGGAATGATTTTGTCTATTGTCTAGACCTTTAAACTGCCTCACTGGAAATACGttagttttgcactttgcacCTAATAAACGTAATTTCAACATGATTAAATGTGCTTTCTTTACGAGGCATATCAAATACAAGCTTCAAAATGTGATCAGGATTTGGAAGACTGAAAAATCAGCACAAACAGATTGAAAAGGGTGTTTTAAACAGACTGACTTTTTTATGTAATGCTGGTAACTGCCTATAAAAG

Function

GO: NA

KEGG:

id description
K00142 AASDH; acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017521 True 3933 mRNA 0.49 14 8591169 8601655

Neighbor

gene id symbol gene type direction distance location
AMCG00017522 exoc1,LOC106560275 coding upstream 4498 8567667 ~ 8586671 (+)
AMCG00017525 NA coding upstream 25358 8560132 ~ 8565811 (+)
AMCG00017517 tmem165,LOC106584122 coding upstream 209499 8376824 ~ 8381670 (+)
AMCG00017518 NA coding upstream 214511 8360180 ~ 8376658 (+)
AMCG00017515 NA coding upstream 308663 8247959 ~ 8282506 (+)
AMCG00017523 NA coding downstream 45791 8647446 ~ 8654342 (+)
AMCG00017533 sgcb,LOC107597442,LOC106584109 coding downstream 197680 8799335 ~ 8806468 (+)
AMCG00017534 NA coding downstream 205360 8807015 ~ 8808994 (+)
AMCG00017538 fryl coding downstream 267459 8869114 ~ 8969478 (+)
AMCG00017543 NA coding downstream 416224 9017879 ~ 9021042 (+)
G91004 NA non-coding upstream 304441 8286292 ~ 8286728 (+)
G90991 NA non-coding upstream 361593 8229315 ~ 8229576 (+)
G90924 NA non-coding upstream 601209 7989696 ~ 7989960 (+)
G90922 NA non-coding upstream 622841 7968120 ~ 7968328 (+)
G90921 NA non-coding upstream 624561 7966320 ~ 7966608 (+)
G91104 NA non-coding downstream 130713 8732368 ~ 8732632 (+)
G91128 NA non-coding downstream 182212 8783867 ~ 8784089 (+)
G91135 NA non-coding downstream 218058 8819713 ~ 8824837 (+)
G91151 NA non-coding downstream 236992 8838647 ~ 8841038 (+)
G91307 NA non-coding downstream 1564875 10166530 ~ 10166747 (+)
G90955 NA other upstream 458315 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 777530 7806378 ~ 7813639 (+)
G90881 NA other upstream 897822 7692585 ~ 7693347 (+)
G90877 NA other upstream 919319 7668183 ~ 7671850 (+)
AMCG00017486 NA other upstream 1402526 6729738 ~ 7188643 (+)
AMCG00017526 paics,LOC107555752 other downstream 86042 8687697 ~ 8700754 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other downstream 150058 8751713 ~ 8764903 (+)
G91281 LOC103376870 other downstream 918118 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3277959 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4595240 13196895 ~ 13259760 (+)

Expression


Co-expression Network