AMCG00017524


Basic Information

Item Value
gene id AMCG00017524
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8607059 ~ 8627186 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017524
CTGAGCTGGCCAGTGGCATAAGGAGCAAAATAcacaagccAAAGCTTGTTTTTACCATGGAAACAGAGAGGAGACGGCAGGGCAAATTCCAGCCACTCAAGAAACTGtttgggaaaaagaaaaagagctcCCCGACTGCCTTTGTGGAAGCTAAACTGAAGAGCAGCCAATCCACCGGAGAAATCTGCAATGGGGGGCTTTCGGAAGATGAGGAAACCAATGAGCATTTAAGGTCATTAAACGAAATGGGTACTCGTGCTTTTTCACATGACAGTATTTTCATCCCAGACGGATCAGAAGAAGGTGGAAGCTCCGAGACAACCATGTCCCAGGAAAGCGTCTCTGACAAAGTTCGAAGCCTCCAGAGACAAATTGCCCACAGTATTAAATTTGGGCAGAAACCGGCCTCCTTTAGGAAGAGTACAGAGGCCGAGGGCAGTTCAGATGAGGAGGAGCTGCCAAGAAGTCCCTTAAAAGTCATTGCCCAAGTTGAGGCAAAGCCAGCAGAGGGTGAGACTAAGGATACTCCAGTAAAATCTCCAAGGACAAAAAGAGCATTTTATGGCACTATAGAATCTATTAATCTTGATTCAGTCCCACTCTCTGTCCCCCGATTGGACAACGCTGCTGCTAAACACAAGCTAGCTGTAAAGCCAAAAAATCAGAGGgatcTGCAAGATCTTTCTCTGCCTGGTACACTGCAAGAGGAAACAGATGTTCAGAAGCATGCAGACAGTCTGCCCAAGCCAGTGGAACATCAGCTCAGCAGATCCAAAGAACAAAGCACACATGATGAAGAACAAGGAATGGATTTCTGCATGactgaaaatgaatctctggagGAATCAAAGAAAATTCAAGAAGAGTCAGGCCTGCTTGAAGACCTTCAGAGGCATGAGGAACAAAGAATACAGGAGGCTGAAGcacagatacagagagaaaTGGAAGAGAAGAGACAGACTGAAATGGAAGAACAAAGGCGGTGTGAAATAGAAGAGCAGCAGAAGTTAGAGGCTGAAAAGCAGAGGCagaagaaggaggaagagcACCGTCTCCGTGAGGCGGAGGAACGTAGAAAGGAAGAAGAAAGGAGGCTGCGTGAGATAGAGAGCGAGAAACAGAATGAGCTGGAGAAGGAACGACTACGCAAAGCTGAAGAAGAGAGATTGTGGAAGGAGGAgcaacagagacagagagaaatggaggagaaaaaacaacGCGAATTAGAAGAGGAACAGAATCGGCTAGCTGAAGAACAAAAGGAAGAGGAGCGGAAGAAACGAGATGCTGAAAACAGACTCCGTGAAATAGAGGAACAGAGGCAACATGAAGAAAGGCTCCGCAAGGAAGCAGAAGAAAAGAGGCTCCaagaggaaaaagaagagaaactACGGCAGGCTGAAGAGGAGAGACTTCGTCTgatggaggaggagatgcaACGTGAAGCTGCGAAGAGAAAGCAACGAGAACTGGAGGAGCAGAAATTTAGAGAGCTAGAAGAACTGAGGcttcagaaaaagaagaaactggGAGAGCAGACTGCAGAGAACCAGGAAAGAATGGAAGAAGAGAGGAAACAatcaggagaaaaaaacaagcatctAGAGGAGCCTGAGAAAGCCACAGCCTTGCAAGAAGAGAGCCCCGATCCACAAGAGCAGAAGAGAAAAGCAGAGGAGCTGCGATGGAGAGAAATGGAGGAGAGGCAAACCACGCCCAGACCTTTCACATTTAAAGTGTCCTCGGgagaaaagcagtttttatttgAGAAGGTGAATCTAACACCTGTGACACCTTCAACCCAACAGAGTAGTGTCCCAGATGCAAAGGAGTTCAAGACTTCTCCAAAAGGTGCAGCCCCTCATTCTCTTCCATCTTCCTTGTATGTCCCCCACACAGCAATTTTGGTAACAGGTGCTCAGCTTTGTGGAACAGCAGTGAATCTCAACCAGATTAAGGATACAGCATGTAAATCTTTGTTGGGTTTAGCTGAGGACAAGAAAGCAATGGATATACCCCCAATTTCAAGTTTAAAGAAAACTTCACCTGAAAGGAAATCTAGCAAAACTAAATCACTAAACGAATCTTCTGGAGATCAGTCCAGTGCTGCAATGTTGGCTGAGTGGGCCAGCATAAGGTCCAAGATTTTTAAAAGTGCAGAAAATGGAACATTTAATGAGAAGGATATAAAACATCACAGCAGACCTACTAGTGATAATTATAACCAAAAAGCATTGTCGGGCTTACACAGCAGCCTTAGAAAAACCATGTCGGCGAATGCGAAGTTCTCTATCACACCTGCGTGGCAGAAATTTACAGAtggtaacaaaacaaatgagaatAAGAGTATCAAGGCTGTGAGTCCAGAGGAAAAAGACAACTCAGAAATTGAGTCATGCTTCCCTGACATTGATTCAATTCATTCTGCTCCTTTAGTCTCTAAAACCCAAGACAAACCTAGTAAGTCTGTTAGGATAGCAGACAGCACTGAAGGGTGTGTATTTGCCAAAGATCTTCCATCTTTTCTGGTCCCAAGCCCTCCCCATGGTTCCAGCAAGGTTCGCTCTATATCAGAGCCACAGAGCCCTCCCGGAGACTCAGAGGATGCTGGAACCAACAGAAAGGGACATCTTGGCGAAGAGAAGCTCTCTCCATTTGGAATCAAGTTGAGAAGGACAAACTACTCCCTCCGCTTTCACTCTGAACAGCcaacagaaaagagaaagaaaaggtaCAGTGCTGGAGATAGCTTCGAAGGTATCCCAACTCCCCTCATCGCCACTGCGTCTGACAGAGGTGCACCTGTGTTTTCCAATGTGTCTAGTCCCACACCCTCATCTTTAAGAGAGAGATCGAGCAATAGTGCCACTGAAATGCCACAGGTCGCCACAGAGCCTAAACTGAAACCAAGTAAAATTGTCATTCCAGTAATACGCAGCGAGAGTGAAAAGCTGCTTTCCAAGCCCCCGTTGTACCAGAAACCTTTGCTAGCTCCCAAACCTGTCAGTGTAACTCCTCCTTCATCTCCACTTGCTAAAATGGACAAGTATAGTTTCGGTGACGTGGTAGCCCAAAGGACTACAACAGAGGACTTAGCCTTAAACCAGAAAAAGGAGGAAAGAAGAGGAGAAGCAACAGCCCAGCTGCAAAAGAAACagcaagaggaggaggagccgaAGGAAAAAAGGTCATTTTTCCCTTCCATCAACATACCCTGGAGGGAGAAAACAGACAGGAAAACAGAGCTCATCAGACGAGaaaAGCCAGCACTTCAAAGTAGGCATTCTCTTGATAGCTCCAGGGTATCTGAGAAGGGGGAATCCAGTCAGCCTCTCTGGATCACATTAGCCCTGCAGAAACAGAAAGGCTTCCGAGAACAGCAGATGAGCCGAGAGGAGAGGAAGCAGATGAGAGAAGCCAAGCTGgttgaaaaacaagcaaaggAAAATGAAGCAGCAATAACACAGTGGAGCCCAAACCCCCCGCAcaggaggaggaaaagaaacCAGACTCTCTTCTGTCCAGATTTGAACGAAGGGAACAAC

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017524 True 3545 mRNA 0.46 9 8607059 8627186

Neighbor

gene id symbol gene type direction distance location
AMCG00017519 clocka,clock,LOC107701480 coding downstream 190580 8387062 ~ 8416479 (-)
AMCG00017516 NA coding downstream 257071 8329147 ~ 8349988 (-)
AMCG00017512 chic2,LOC101486940,LOC103353160,LOC107714214,LOC107562985,LOC102236523 coding downstream 445615 8142440 ~ 8161444 (-)
AMCG00017513 NA coding downstream 564605 8023656 ~ 8042454 (-)
AMCG00017506 NA coding downstream 615619 7989793 ~ 7991440 (-)
AMCG00017529 NA coding upstream 36464 8663650 ~ 8677813 (-)
AMCG00017530 ppat,LOC106560282 coding upstream 52627 8679813 ~ 8694359 (-)
AMCG00017528 NA coding upstream 74692 8701878 ~ 8730713 (-)
AMCG00017532 NA coding upstream 145023 8772209 ~ 8780221 (-)
AMCG00017536 LOC107683324 coding upstream 162996 8790182 ~ 8798194 (-)
G91064 NA non-coding downstream 1433 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 225389 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 319942 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 377498 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 442154 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 967744 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 1005459 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 1035378 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 1048360 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 1050285 9677471 ~ 9680221 (-)
AMCG00017520 NA other downstream 92104 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 610464 7992137 ~ 7996595 (-)
G90937 NA other downstream 774467 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 927709 7668024 ~ 7679350 (-)
G90746 NA other downstream 1418411 6733235 ~ 7188648 (-)
AMCG00017531 NA other upstream 105574 8732760 ~ 8748743 (-)
G91119 NA other upstream 128102 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1734114 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2876838 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3250174 11877360 ~ 11900600 (-)

Expression


Co-expression Network