AMCG00017526 (paics,LOC107555752)


Basic Information

Item Value
gene id AMCG00017526
gene name paics,LOC107555752
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8687697 ~ 8700754 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017526
CAGGAAAGCACTGGTCTGAAGAGGAGGTTAAAGCTTTGCTGACTGTTTGGTCTgagaaaaacattcagaaattTCTCCATGGAGCAACAAGGAATAAAGCTATgttcatatacatttcaaacaggCTGCAGGACTTTGGAGTATTTCGAGACTGGAAACAGTGCCgggcaaaatataaaaacctcAAGTATGAATACAGAACTGTGAAGTACGCCCAGAACAGCGGTGACCCGGGGAAATCCATGAAGTTTTTCCAGGAATTAGATGCCATTTTGGCTTCTGAAACCGTCTCTGGGCTAccagaagaggaagaggaggatgaggaggagagCGTGGTGTGTTCAAACTCCGACAGGATCAATGAGGAAGAATCCCAGTCCAGGGCAGACATAGTTAATGCAGGCAACCCACAGACGATAAAGGATCAGGCTCGACTGGCCTTCATCCCCTCCGTGGCCACTGAGGGGGGGAAGCACTGGACAGACGATGAAGTCAGAGCCCTACTGTACATCTGGTCTGACAAAAAGATTCAGGCCAGGCTGGAAGGGGCCGCGCGCAACAAGAGCATTTTCCTGGAAATCGCCAAGAAGCTGCAGAGGTTCGGAATCGACCGCGACTGGAAGCAGTGCCGCACCAAATACAAGAACCtcaaatatgaatacaaaatcgCCAAAAACTCTCTGAGCTGTGGCAACTTGTGGAAGAGCATGAAGTTCTTTAAGGAGCTGGAGTCCATTCTGGAAACCAAAGGAAGCGAACCGACAGACCGAAAAGATGGCCAAGAAATTGACATCAGCGAAGATGAGGACTCAGTCAGTATCACATCAGAAGACCTTACTATTCCAAGCTCATGGAAGAGGCTATTGAAAGACACCGAGGATCGTACGCCCTTTGACAGAACGCAGATTAGAGTCATTACTGTCAATGACACCGGGATTGGGAGGAACTGGAGCGACGAGGAGGTGAGGGCGCTCATTTTTGTCTGGTCCGATGAAAAGATCCGGCGGCAGCTTGAAGGAGCGACaagaaacaaagacatttttgtGAAGATTTCCAGAAGGCTGATGCAGATTGGCATAGATCGGGACTGGAAGCAATGTCGGACAAAGTACAAAAACCTGAAGTACGTGTACAGGACGCTTCAACGAGGAAAAGGCAAACGCAGCGATCCCAGAAGAGTGATGCGATTTTATGACGAAGTTGATGCCATTTTGAAAAATTCGAGCGGTCCCCAGCGCAAGAGGTCTGAGGAGCATTCCCAGCCAACGGATCAGAACAACAGCGAGGAGAAAGGCACTCCGTCAAGGCCCGACTCAAGAGCTGACAGTAGTGCAGATGACGAAGACTCCTTGTGTACAGTTGAAAAATCAGTATGTCGAGGAACAAAGAGGAAAGCCAGAGATGAAGaaccTTCTATATCTGCAAAAAGGGGGTCAAAGAACCGTGGAAGCAGCAAAGTCGAGGTTCCTGTACAAGTGCATGTGgaatacaaatgcaaagaaGAGGAAGACGATTCATATACCCCTATAATTCAGATCAACTCGGTGTGCTCCATCACAACTTCTGCGTTTTCTCCAGAAAAACAGgatgtCCCCGAAACGATGCAACATCTGCAGAATGCGAGGGTCTCTCACCCCAAACGTCTGCAAGAGGTACAAACACTGACGGGTGAAATGGCGTCTGCACCAGAATTGAAGCTGGGCAAAAAGCTGAACGAGGGCAAGACCAAAGAGATCTACGAGCTGCCCGGGCAGCCGGGCCATGTGCTCGTCCAGTCCAAGGACCAGATCACTGCGGGCAACGCCGCTCGCAAGGACCAGATGGAGGGGAAAGCGGCCATCGCCAACCAGACCACCTGCTCCGTGTTCAAACTGCTGCACGACTCCGgaaTCAAAACTGCGTTTGTGAAGCAGCAGTCTGACACGGCCTTTGTGGCAGCTCACTGTGAAATGATTCCCATTGAGTGGGTCTGTAGGAGAATTGCCACCGGCTCCTTCCTCAAGAGGAACCCTGGAGTGAAGGAAGGCTACAGGTTTAGTCCCCTCAAGATGGAGATGTTCTTCAAGGATGATGCCAATAATGACCCCCAGTGGTCAGAGGAGCAGCTGATCGAGGCCAAGTTCTGCTTTGTAGGCCTGAAAATCGGTCGCTGTGAAATCGACGTGATGAACCGGTCCACTATGGCAATCTTTGAGATTTTGGAGAAGGCCTGGGCAACTCAGGATTGCACACTAGTGGATATGAAAATTGAATTTGGTGTTAATGTAACAACCAAGGAAATCGTTCTCGCTGATGTTATTGACAATGATTCGTGGAGACTTTGGCCATCAGGGGATCGAAGCCagcaaaaagacaaacagGTGTACAGAGATCTGAAAGAAATTACTCCTGAGGCGATGCAGGTGGTCAAGAGAAACTTTGAATGGGTTTCTGAACGAGTCAAGCTGCTGTTGGAGCCGCGGAGCAGTAGCAGGGTGGTGGTTCTGATGGGCTCCACCTCGGACATGGCCCACTGTGACAAGATCAAGAAGGCTTGTGCTGGCTTCGGCATTGCCTGTGTGCAGAGAGTCACCTCTGCCCACAAAGGGCCTGACGAGACTCTGAGAATAAAGGCGGAGTATGAAGGTGATGGTGTGCCCACAGTGTTTGTTGCAGTGGCTGGCAGAAGCAATGGTCTTGGCCCAGTGATGTCGGGCAACACCGCCTACCCGGTTATCAACTGCCCCCCGGTCAGCCCTGACTGGGGTGCCCAGGATATCTGGTCCTCTCTGAGAATGCCGAGTGGTCTCGGATGTACCACTATCCTTTCCCCCGATGCTGCTGCACAGTTTGCTGCTCAGATCTTTGGTCTGACTGACCACTTGGTCTGGGCTAAACTGCGAGCTTCCATTTTGAATACCTGGGTTTCTCTGAAACAGGCCGACAAAAAACTGCAAGAGTGTTCcctttagaaaaatataatccAGAATTGTTTTGTACTACGCGCttccaaaataaaagcattttcccAGAAAACTGA
>TU113646
GCCACATTTACTAGAGAAGCCTCAGTAAGCAAATTATGAGGTGGGGAAGCCTTAAACTAAAATATTCTAGCTTGCTTTTAAGGAGTTTCACAAAGGAAGTGACAGATAAGCATTGTTCACTGTAGCTGCTCAGATAAGATCTTGAAAGCGTCACTTGTAAAACATTTGCTTCTGAGTTGCCTTATTTGGAAAGACTCTGCATTGCAGCCTGCTTACCAGGCTGCTTCTCGGATTACACGAACTCCCTCCCCCTACACAGCTTAAGCCAGTAATGAAGCTCCTTTTGTCCGCGTCTGCGCTCGGTGACAACCAGCCGTCTGGTTGCCTTGACAACTAGGTGGCACGGGGGGGAGAGGATTGCTTCCAGGTCATTTTGAACATGGAGTGTGGAGCAGGAAAGCACTGGTCTGAAGAGGAGGTTAAAGCTTTGCTGACTGTTTGGTCTgagaaaaacattcagaaattTCTCCATGGAGCAACAAGGAATAAAGCTATgttcatatacatttcaaacaggCTGCAGGACTTTGGAGTATTTCGAGACTGGAAACAGTGCCgggcaaaatataaaaacctcAAGTATGAATACAGAACTGTGAAGTACGCCCAGAACAGCGGTGACCCGGGGAAATCCATGAAGTTTTTCCAGGAATTAGATGCCATTTTGGCTTCTGAAACCGTCTCTGGGCTAccagaagaggaagaggaggatgaggaggagagCGTGGTGTGTTCAAACTCCGACAGGATCAATGAGGAAGAATCCCAGTCCAGGGCAGACATAGTTAATGCAGGTGAGATCTGTGTGGCTTTGGAGGAGGATGATGTAAGCTCAACCTCAGACGACCCACTGCCTTGTTCTCCATCAAAGGCCAACACATGCGAGACAGG

Function

symbol description
paics Predicted to enable ATP binding activity; carboxy-lyase activity; and phosphoribosylaminoimidazolesuccinocarboxamide synthase activity. Acts upstream of or within chordate embryonic development; pigmentation; and retina development in camera-type eye. Predicted to be active in cytosol. Is expressed in several structures, including eye; immature eye; midbrain; neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human PAICS (phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase).

NR:

description
PREDICTED: multifunctional protein ADE2

GO: NA

KEGG:

id description
K01587 PAICS; phosphoribosylaminoimidazole carboxylase / phosphoribosylaminoimidazole-succinocarboxamide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017526 True 3019 mRNA 0.50 16 8688089 8700754
TU113646 False 891 TUCP 0.47 2 8687697 8689406

Neighbor

gene id symbol gene type direction distance location
AMCG00017523 NA coding upstream 33355 8647446 ~ 8654342 (+)
AMCG00017521 NA coding upstream 86042 8591169 ~ 8601655 (+)
AMCG00017522 exoc1,LOC106560275 coding upstream 101026 8567667 ~ 8586671 (+)
AMCG00017525 NA coding upstream 121886 8560132 ~ 8565811 (+)
AMCG00017517 tmem165,LOC106584122 coding upstream 306027 8376824 ~ 8381670 (+)
AMCG00017533 sgcb,LOC107597442,LOC106584109 coding downstream 98581 8799335 ~ 8806468 (+)
AMCG00017534 NA coding downstream 106261 8807015 ~ 8808994 (+)
AMCG00017538 fryl coding downstream 168360 8869114 ~ 8969478 (+)
AMCG00017543 NA coding downstream 317125 9017879 ~ 9021042 (+)
AMCG00017544 NA coding downstream 385823 9086577 ~ 9103203 (+)
G91004 NA non-coding upstream 400969 8286292 ~ 8286728 (+)
G90991 NA non-coding upstream 458121 8229315 ~ 8229576 (+)
G90924 NA non-coding upstream 697737 7989696 ~ 7989960 (+)
G90922 NA non-coding upstream 719369 7968120 ~ 7968328 (+)
G90921 NA non-coding upstream 721089 7966320 ~ 7966608 (+)
G91104 NA non-coding downstream 31614 8732368 ~ 8732632 (+)
G91128 NA non-coding downstream 83113 8783867 ~ 8784089 (+)
G91135 NA non-coding downstream 118959 8819713 ~ 8824837 (+)
G91151 NA non-coding downstream 137893 8838647 ~ 8841038 (+)
G91307 NA non-coding downstream 1465776 10166530 ~ 10166747 (+)
G90955 NA other upstream 554843 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 874058 7806378 ~ 7813639 (+)
G90881 NA other upstream 994350 7692585 ~ 7693347 (+)
G90877 NA other upstream 1015847 7668183 ~ 7671850 (+)
AMCG00017486 NA other upstream 1499054 6729738 ~ 7188643 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other downstream 50959 8751713 ~ 8764903 (+)
G91281 LOC103376870 other downstream 819019 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3178860 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4496141 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 5080512 13781266 ~ 13830819 (+)

Expression


Co-expression Network