AMCG00017527 (tkfc,LOC107731922,LOC107095500)


Basic Information

Item Value
gene id AMCG00017527
gene name tkfc,LOC107731922,LOC107095500
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8751713 ~ 8764903 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017527
ATGCAGGCTCAGAAGAAGCTGCTGAACAGTGTTGAGGGCTGTGTGGACGATGCCCTGTGGGGGCTGGTGAGCGGCTGTGGGGgtctgtctgtgctgcaggGGCATCGCGTGGCCCTGCGCTCCGACCTGGAGGCTCTGAAGGGCCGCGTTGCCCTGCTGTCTGGGGGCGGATCGGGGCACGAGCCAGCGCATGCagGCTATATTGGCAGAGGGATGCTGTCGGGGGCAGTAGCTGGGGCTGTGTTTGCTTCGCCCCCTCCCGGCAGTGTGTTGGCTGCAATCCTGGCTCTGTGGCGGGTTGGGGCGACAGGTGTGCTTCTCATTGTGAAGAACTACACAGGTGACCGCCTCAACTTTGGTCTAGCGCTGGAGCAGGCCCGGGCACAGGGGGTGCCTGTGGGCATGGTGATTGTGGCTGATGACTGTGCCTTCGCCGTGCCGAGCAAGGCTGGGAGGAGGGGCCTGTGCGAGGAAGGGTGTCCCCTGGAGGAAATAGTGCAGAGAGTGACCGAGGTGGCCAGAGGGATCGGTACTCTGGGGGTCAGTCTGTCTCCATGTAGTGTACCTGGATGCTGCCCAACCTTTGACCTGCCACTAGGGGAGATGGAGCTGGGACTGGaCTCCAAAACTACAGCTCCTGCTTGGCCTAACATCAGCAGTGTTCCCCTGACTGGGCAGATCCGCACTGTAAAGACATCTTCACAGGAGAAGACCACAGAACCAGAGGAAATGACAAAGGAGGGTCCCCACTCTGCCCTGCTGCGGAGAGTGCTGGATCACGTGTGCGTCTCTCTCCTCGCTCGCCAGGAGGAACTGAATAAACTGGACCGAGCGGCGGGGGACGGAGACTGTGGCAATACTCATGCACGGGCTGCTCGGGCCATCCAGGAGTGGCTCCAAGGTCATGTGATTCCACAGTGTCCAGGGCAGCTGCTCTCTTCTCTCGCTGGATTGCTCTACAGTCTGTTCCTGACAGCTGCTGCTGTCCCCCTCAGAGGACATAATGATGCTGGTGCATGGGCTGatgcaatgcatgctgggacaGAGGCCATGAAAAGGTATGGCGGAGCAGAGCCTGGGGACAGGACCATGCTGGATGCCCTGTGCCCTGCAGTGGAGGAGTTGAGGAAACTGTCTTCAGCACCAAACGATGGACAGATTGCAGTGCTGCAGCGAGCTGCGGAGCGGGCCGATAGGGGCGCAGAGTCGACGCGAGACCTCACGGCCAGGGCGGGGCGAGCCAGTTACATCGCTGCAGAGCGGCTGACCCTGCCTGACCCCGGCGCCGTGGCCATAGCAACCATACTGAAGGCAGTCCTCAGTGCCCTGAAGGAAGGGGCGGAGgccagccaatcagagagcaCACTTCCAGGGGCTGGGATCCCATTCCCAATTAAGTGA
>TU113671
GGTCACgaactgcagagagagcagaCGAGTGCGCAGTTTCTTTCTAATAAACGAGCTCCGGCACAGACTCCCTACCATCTACCGACTCGGCACCATTGTCACTGGGGTGAGAGAAAACTGCGGAGACCATGCAGGCTCAGAAGAAGCTGCTGAACAGTGTTGAGGGCTGTGTGGACGATGCCCTGTGGGGGCTGGTGAGCGGCTGTGGGGgtctgtctgtgctgcaggGGCATCGCGTGGCCCTGCGCTCCGACCTGGAGGCTCTGAAGGGCCGCGTTGCCCTGCTGTCTGGGGGCGGATCGGGGCACGAGCCAGCGCATGCagGCTATATTGGCAGAGGGATGCTGTCGGGGGCAGTAGCTGGGGCTGTGTTTGCTTCGCCCCCTCCCGGCAGTGTGTTGGCTGCAATCCTGGCTCTGTGGCGGGTTGGGGCGACAGGTGTGCTTCTCATTGTGAAGAACTACACAGGTGACCGCCTCAACTTTGGTCTAGCGCTGGAGCAGGCCCGGGCACAGGGGGTGCCTGTGGGCATGGTGATTGTGGCTGATGACTGTGCCTTCGCCGTGCCGAGCAAGGCTGGGAGGAGGGGCCTGTGCGGTACTGTGCTGATTCACAAGCTAGCTGGGGCGCTGGCAGAGGAAGGGTGTCCCCTGGAGGAAATAGTGCAGAGAGTGACCGAGGTGGCCAGAGGGATCGGTACTCTGGGGGTCAGTCTGTCTCCATGTAGTGTACCTGGATGCTGCCCAACCTTTGACCTGCCACTAGGGGAGATGGAGCTGGGACTGGgAATCCACGGGGAGCCTGGCATcaagaggtcaaaggtcagtgAAATGATACTATCATGCAGGtgta

Function

symbol description
tkfc Predicted to enable glycerone kinase activity. Predicted to be involved in glycerol catabolic process. Predicted to act upstream of or within glycerol metabolic process and phosphorylation. Predicted to be active in cytosol. Orthologous to human TKFC (triokinase and FMN cyclase).

GO:

id name namespace
GO:0006071 glycerol metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004371 glycerone kinase activity molecular_function

KEGG:

id description
K00863 DAK, TKFC; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017527 True 1401 mRNA 0.61 11 8752365 8764903
TU113671 False 852 TUCP 0.61 6 8751713 8753781

Neighbor

gene id symbol gene type direction distance location
AMCG00017523 NA coding upstream 97371 8647446 ~ 8654342 (+)
AMCG00017521 NA coding upstream 150058 8591169 ~ 8601655 (+)
AMCG00017522 exoc1,LOC106560275 coding upstream 165042 8567667 ~ 8586671 (+)
AMCG00017525 NA coding upstream 185902 8560132 ~ 8565811 (+)
AMCG00017517 tmem165,LOC106584122 coding upstream 370043 8376824 ~ 8381670 (+)
AMCG00017533 sgcb,LOC107597442,LOC106584109 coding downstream 34432 8799335 ~ 8806468 (+)
AMCG00017534 NA coding downstream 42112 8807015 ~ 8808994 (+)
AMCG00017538 fryl coding downstream 104211 8869114 ~ 8969478 (+)
AMCG00017543 NA coding downstream 252976 9017879 ~ 9021042 (+)
AMCG00017544 NA coding downstream 321674 9086577 ~ 9103203 (+)
G91104 NA non-coding upstream 19081 8732368 ~ 8732632 (+)
G91004 NA non-coding upstream 464985 8286292 ~ 8286728 (+)
G90991 NA non-coding upstream 522137 8229315 ~ 8229576 (+)
G90924 NA non-coding upstream 761753 7989696 ~ 7989960 (+)
G90922 NA non-coding upstream 783385 7968120 ~ 7968328 (+)
G91128 NA non-coding downstream 18964 8783867 ~ 8784089 (+)
G91135 NA non-coding downstream 54810 8819713 ~ 8824837 (+)
G91151 NA non-coding downstream 73744 8838647 ~ 8841038 (+)
G91307 NA non-coding downstream 1401627 10166530 ~ 10166747 (+)
G91310 NA non-coding downstream 1532499 10297402 ~ 10297808 (+)
AMCG00017526 paics,LOC107555752 other upstream 50959 8687697 ~ 8700754 (+)
G90955 NA other upstream 618859 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 938074 7806378 ~ 7813639 (+)
G90881 NA other upstream 1058366 7692585 ~ 7693347 (+)
G90877 NA other upstream 1079863 7668183 ~ 7671850 (+)
G91281 LOC103376870 other downstream 754870 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3114711 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4431992 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 5016363 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 5260733 14025636 ~ 14039063 (+)

Expression


Co-expression Network