AMCG00017528


Basic Information

Item Value
gene id AMCG00017528
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8701878 ~ 8730713 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017528
CCCCCCCCGCCTGATGCGCGGCTGCACTGCCTCCCAGGACGGGCTGTCCGCAATGACGGCGGGGCAGTGAGCCCAGAGAGCCGCAGAGAGAAGCGGGCGTCCCGGCTGCCGTGCGGGATGCTGGCGCTGAGGTGCCTGTGCCTGTGCGCGCTGCTGTCCCGGGCGGACTGCCGGCTGCTGCCCGGCGCACGGAGGAGGGCGCAGAGACTGTACTCGCCGCAGCTGCACAGCCACAGACCTCGTTCGGGCCCCCACAGGTGCCAGTCTGGAGGGGGGAGTGTGTGCTGTCCTGGCTGGGCCCCCTCTGCTGTGAGCGGCCTCTGTCTGACACcgGTGTGTCCGTTGGGCTGTGGCAGTGGGCTGTGCATTGCCCCCAATCTGTGCCTGTGCCATGGAGGGAAGCAGGGATTCACATGCCAAGGCGAGGGCCGTGCCGCGGGGTTCCCATCTGATGACTTCGCAAACAATTCCCAGCTGGAGGGAAGTCCCGCCTCCTGCCTGTCTGCAGGCTGTGAACACACCTGTGTTATGATTGGAGGATTCCCAGTCTGCAGTTGCTCCCTGGGATACATTCTGGCCAAGGATGGACGCAGATGCCAGGGCTGTGGGCAGTATGGCTGTGAGCTCCTGTGTAATCATGGAGGCTGTGAGCTGGTTTCTCGGGTCTGTCCTGCAGGGTTCTCCATGACTGAGACGGACAGCGGAGTCACCTGCACAGATATTGATGAGTGTTCTGGGGGAAGGTCACCATGCCAGCAGCAGTGCCTGAACATTGCTGGAAGCTACCAGTGCTCCTGCCGTGCTGGATTCTACCTCCATGGCAATGGGCGCACCTGTGTAGATGTGGACGAGTGCTCCAGCCCCGCCCCCCCTCGCTGTCAGCAGCGATGTGTCAACACTGTGGGCAGCTTCCACTGCGCCTGTCGCCGTGGGTACCGCTACAGCAGCCAGCGACACACATGTGCAGATGTTAATGAGTGCGAGACTCTGGCCTTGGCTGTGTGCCAGCACTCTTGCCGGAATTCACCTGGTAGCTTCCAGTGTCTCTGCCCAGATGGACACAAACTGCACCCCAATGGCAGGAACTGCACAGATGTGGATGAGTGTGCTTCTCCTCTGTCCAGCCCCTGTGCCCAGCTGTGCATCAACACCCTTGGGAGCTTTCACTGCCACTGTCACCATGGATACAGTCTCAGCAGTGATGAGACATCCTGCACAGTGGAGACCTCACCTTGCCTGACTTGTCAGAGTCAGTGTCCTCCAGGAATGATGCTGTTACCCAATGGTGTTGACTGTACAGaTGGGCCTGATCCCCTGGACTCTCCCCCTGTTCTCCAGGAATCTCCTCTGCTCTTATCAATCAAGACGAGTCATTCCGCAGCTCCTGCCGCCACAGAGACGCTCACCTTTCCACCAGTCTATCGCTCTCCATTATTGACCTCTGTAGATCTGCCAAGCCTACAGGCCAGATTATCACACCCAACCTTCCAACCATCTCAGCCCTCTGTAAAAATGTTCAAAGCTACTCCTATAGTAGATAATGAGCTCTTAATAGCTCCCACCATAGAAACAACACTTACCACAGTACGTTATGTGGTTACCAACCATTATGTAGTCACTGCCACGGATTACACTCCTTTTGTAGCCAGTCCTAGCTCACACACTCCCCCTATAGCCACTCTCACTTCTGAGGTCTATCCTGCACTCCTTCCTACTGAACATCCCCATCCTGCCACCGGTCTGACCTCGAACATCCTCAGGACAGTACCTGCCTCCTTATCAACCCTTTCTACAGCTCCTCCACCCTCAAATGCCCTACCTACATCTGCTCTTGACTTCAGGACTACACCAGCTGTCTCCACCCTTCATTTACCACCTGCCAACATTTCTATAAATAGGGTGACTTTATACCCTCAGAGCTACCAGAGCCCCAGCCCTGTGCAGCTCTCTACAGTCAACAAAACAATTCATCATCATCGATCTGACAGCATCTTCCATGAATCCCTTTCTACCCTTCCTACAGCAGTGCCATATCAGACTGAGGCACTCACTTCCCTGCCCTCATTCAGCCTACATCTCCCAATCCCCACACCCACACTCACCCTAGAGGATGCCAGCTCCACACCCCTCACTCCCCCACACACCTTGCAAGCCTTCGATGTCACACAAACAACTCCCCAGCTGCTGACAGCCTCTGCCTTCCCCTATGGAGAAGCATCCTCTGCTTTGCCGGCCTCGACAAATCCTTCACCGCAGCCCCAAGTGGCCACACCCACACCTCCACTTTATTCCCACCAGCACAGCCCTTTCATCTCCAACACACTATCCGCCATCACCCAATCCCATGCCACGCTTGCCCAGCCCTCCCAAAACGCTGCACTCCAGCCCTCCAGACAGACACAGCTCACTCCATCAGACATGGACCAGCCCTCCCCACATGCCCAACACAACCCTCCCAGCATGCTTCTTCCGTCCTCACACACCCAGCCAACCCAAAACATCACACCTCAGTCCTCTGTACAGACACAAGCCACTCCATTTAGCACCATCCAGCCTTCCACACATATAGAGCCCACACCACTTAGTGCCCTCCAACCCTCCTCACTGACTTCCTCCTCAGGTCTGCTGTTAAGAGGCGCCACACTCTTGTCTCCTCCTTCACCCGTTGTTGTTGATTCAGAGCTTGATGTCTACCAACGTCTACTCACAGTAGAGCACCTGTTGAGGGCTGCACCCATTGGTTCCCCTCTCACCGATGAGTTGGCACCAGCGGTCGCCCTCCCCATCTTGGGTGTCCTGCCCACCGCCCctctcccctcactgtcctttTCTCCAGTGTTGACCCCGGCCTTGTGCCTCCACCAGGGGGCGCAATACAGTGAGGGCAGCAGCTGGATGGACCAGGACTGTCACAATTGCACCTGCATGGAAGGCTCTATGATTTGCCACAAAGTGACCTGCAGCGTTTCCTGTACCCACCCTGCCTGGGATCCTGAGCACTGCTGCCCCACCTGTAACCTCACTTGTGCCCAGCCTGTCCTGTCTGAGTGCTGCCCGCTGTGCCCAGTCCAGTGCAGGTACCTGGACCAGGAGTATGCAGAGGGGTCAGAGTTCTCTCCACCTGGAGATGGCTGTGCAACTTGTATTTGCCAGAATGGCCAAGTTGACTGTTACTACCCCCCGTGCCCCGTGCTGGACTGCTCCCCAGGGGACTGGGTGCGGGAGGCTGGAGAGTGCTGCCCATCCTGTGCgcaggaagagaaggagagagGCTGCTCTGTAGATGACAATGGGGTGGAGTTTCCTGTGGGACAGATCTGGTCTACTGGAGACCCCTGTGAGACATGTGTGTGCCAGgtggGTGGGCTGGTGGTCTGCCAGCGAACCCAGTGTGTAGAGGTCTGCCCCCACCCCATTCGTGTCCCAGGACAGTGCTGCCCTGACTGCTCCATGGGCTGTAGCTACAGTGGGATGGTGTACGAGAACAACGAAAGCTTCCTGTCTCACTCAGATCCCTGTCTCACCTGCATCTGTCTGGCTGGCTCTGTAGCCTGCTCCCCCATTTACTGCCAGCCCAACTGCACCTACCCATTCCACCAAGAGGGGGAGTGCTGCCCCCTATGTAATGACTGTAACTACGAGGGACGGAAAGTGTGGAACAGCCAGACATTCTCCCCGGAGAGCCAGCCATGTATCCAGTGCGTCTGTCAGTTTGGAGAGGTGAGCTGTGAGGAGATCACCTGCATTGTACCCTGCTCTCACCCCTATGCCCTGCCAGCAGAGTGCTGCCCCACCTGCACAGtgtgtctgtatgagGGACAGGCCCTGGAAGATGGAGGCTATTACATCTCCGAGGTGGACCCCTGCaccGGAGCGTCAGCTGTGAGTGGAGAGGGGACTCCTGTCCGGACCCGACCTGTGGTGGCCCACTCACACATCTGGCAGGACAGTGCTGTCCCGTCTGTCCAGGCGATCTCCCTGAAGGGGACCATGTCTATCGCAGCTTTTAAGGCTCATGTGCAGAAAAGTGTCCCAGCACCAGTGTCACACAAACTCTCTACTTTGCTTGGGATCAACCGTACAGCCATGGCTACCCCAGTGGCCAGACACACTGCTCAGGAGTCCCCAGCAGCACCGCCAGAGAAGTCCACCAGTTTGCCAATCACAACTCTGGAAACGGCCCATGCACTGAATCCTCTGTCCCATATGGTCTCACGCTCCCAAACCAGCACCTCCCCTCCACCCCTTGCTGCTTCACCAAACCAGACTCCAACCCCTGCCCTGGCTGCCCACCCCCAGCACACCAACAAACTGCATCAATTGTCCACTGAGCCAGAAACCTTAACCAGAGAGGGAGCAGAGGTAAAAGGAGACCCTCTAAAACAGCAGACCCCAGGCTGTGTGTTCCAGGGCTTGGTGTTTCCTGATGGTTCTGTGTTCTCTCCAGACTCCAGTCCCTGTGTGTTGTGCTACTGTGAGTGTGGTCTGTCGCAGTGCTGTGTGCCCAGTGCCGCCCGGCCTCAGAGCCGTACAGGATGCTTCCTGTTGCCATGCCTGCCCAGAGCCAATGGGATGAGGTTCACAAACGGGACAACTTTTAAGACAGAGGACTGCAGCAAGTGTGTGTGCACAGATGGAGAGCTGGTGTGCAGAAAGGACAGGCCGCACTGCCCTCCTCTTTCCTGTGCCGCCCCACTGGTCATGACTCCTCGAGGGCAGTGCTGCCCACAGTGTCCTGAGGACCAGAGCTGTGCCCATAAGGGTGAGCTGTACCAGGGGCAGTGTGGACAGAGGGCGCCGCGGTGTGCCAGTGTGAAGATGCCATTGTCCGCTGTCACTCCAATGCTCTCCCTCAGGACGGCCTGGACCAGTGGAAGACGAGTGACAGGATCAACAAAACCACAACTGATTAAAGCAAAAAGACAGATGAATATGTACTGCTCCAGTGAGAAAAGACACTATTACCACCCCCAGCCTCCACACTGACACCCAGGGAACAACGGCAAGTGGTTTTAGCCCAAAATAATCCTTGACATTTTCCCAACTGATCTCAGTCCACGAGTATTGATTGGTTGGACCTTGTTTACCAGTCAAAGCTATGAAAGCACAACAAAAAGTCTTAAAGGGAAGGGGAAAACAGCACATTAACAGTGAGCAGCTACAAAccaaatgttaattatttgtaaatatgtatgtgtatttgtaattgcTATTGAGTGTTTCTTGAATTCAGGATGTATGCCTTTCCTCTAGCTGTCCTTTGCAATTGTATCTTCACTTCTTGTAAACCAAAGAAATGTTTCCTCACTGTGTATATGGAACTCCATTGAACCTATGTTTGCAAGGTTCCTGACCACTTTAATGATTTTGATAATGTTCAAAAAATTattgtgttcaatttaaatgcat

Function

GO: NA

KEGG:

id description
K24519 VWCE; von Willebrand factor C and EGF domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017528 True 5409 mRNA 0.56 31 8701878 8730713

Neighbor

gene id symbol gene type direction distance location
AMCG00017530 ppat,LOC106560282 coding downstream 7519 8679813 ~ 8694359 (-)
AMCG00017529 NA coding downstream 24065 8663650 ~ 8677813 (-)
AMCG00017524 NA coding downstream 74692 8607059 ~ 8627186 (-)
AMCG00017519 clocka,clock,LOC107701480 coding downstream 285399 8387062 ~ 8416479 (-)
AMCG00017516 NA coding downstream 351890 8329147 ~ 8349988 (-)
AMCG00017532 NA coding upstream 41496 8772209 ~ 8780221 (-)
AMCG00017536 LOC107683324 coding upstream 59469 8790182 ~ 8798194 (-)
AMCG00017537 NA coding upstream 84337 8815050 ~ 8834367 (-)
AMCG00017535 NA coding upstream 106140 8836853 ~ 8843458 (-)
AMCG00017539 NA coding upstream 239478 8970191 ~ 8972241 (-)
G91064 NA non-coding downstream 96252 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 320208 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 414761 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 472317 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 536973 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 864217 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 901932 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 931851 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 944833 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 946758 9677471 ~ 9680221 (-)
AMCG00017520 NA other downstream 186923 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 705283 7992137 ~ 7996595 (-)
G90937 NA other downstream 869286 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 1022528 7668024 ~ 7679350 (-)
G90749 NA other downstream 1588697 7112436 ~ 7113181 (-)
AMCG00017531 NA other upstream 2047 8732760 ~ 8748743 (-)
G91119 NA other upstream 24575 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1630587 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2773311 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3146647 11877360 ~ 11900600 (-)

Expression


Co-expression Network