AMCG00017529


Basic Information

Item Value
gene id AMCG00017529
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8663650 ~ 8677813 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017529
TTCTTAGCGCCATTTTCAAATGCTGTAGCTGTGCTTTACCGCCGAGAGAGTCCCCTGAAGCCGCCAGAGGAACAGGAAACCGGGGGAGGGACAAGAGCTCAACCGACTCTTTAAAGAAATGACGGGGACATCTGACAGCTAGACTTAACGCACAATTGAGCGGATTAAACTAAACAACTCTATAGGCAGTCGCGTAACAATATGTATACGTTTAAATCGTGGCCTGTCAGAAGAAGGGTGGCTGTATGACGGCAATGTTTATAAGCGAGTTGTGCTAAAACCAGACATGCAAGACATTTGATTTGCTCTTTAACGCGTCTGGCCGCACAGCTACAATGAGCAGCACCGCCGAGAGGAAGTTCATCAACCTGCGCAAACGGCTGGACCAGCTGGGCTACCGACAGCCTTTGGGCATCGAGTCCTTGCCTTTGGTGGAAAAGCTTTTCAGTGACCTTGTGCACACTACGGAAAGTCTGCGCAATGCCAAGCTCTCCGCTGGGAAAACCGAGAAGGAGAGCAAAAATTTGGATGCCTTGCTGGAGCCCTACAAAACAGAGAATGCCCGTCTGGTGAGGGAGAACAATGAGCTGCACCTGGGGGTGCTGAAgctgaaggaggagaaggacCGGCTCAGCAAAGACCTGAAAGCTAACATCAGGAGGCTTGAGCATGAGACGGCAGATCTGAAGTTTTTGAATAACCAGTACGTCCACAAATTGCGCGCCCAGGAAAAAGACAGCAAGGCGAAGACGGAAATGATCCAGCAGTTGCAGGAGAAGAACTTGCAGGCGGTCGTGCATACACCAGGTGGCAAGAAAAGGATTATTCCTTTCAGACGCCAGCGGATGCAGATCGATGAGTTCGTCCCTCCCTCCCCTGTGAAGTCACTGCCCGTCTCCCAGCCTGATGATCCATATATAGCCGACCTCCTTCACGTGGCTGATGACAGAATTCAGGAACTTCAGCAGGACGTGACGAAGCTACGTCAGGAATTGGAAAGAGCAGACGTGGAAATACGGCATCTGAACAAACAGGtctcggagagagagagagaaatcgaGCGCCTCGGTCGGGCCCTGCATGGCGGCCGGCCTCATGATGTCATCTCTCTGGAAGCTCAGAATATAAGTAATGAGAAGCTCATCTCTCATCTCAATCTGCAGATTGAATAccttcagcaaacaaactgtGACTTGGAAACACGAATGCAGGGGCttcaagagaggaaaaaaaatgccacCAGCGAAGTTGCCGATTTAAGTGCTAAAAATGAGGAGCTGTGCCAGGAGCTCACAGAGATCGATCAGCTGGCACAGCAGCTGGAAAGAGACAAAGAAATCGTGCTGGAGACGGCCGATAAGGAGCTTCAGGAAGCAAAGAAGGAGATCCAAAGACAGCACAGAAAAATAGAAGACCTTGAAGATGCCATAGCAAAGTTAAAAATGgATCTGACAGAAAGTCGTCATGAAAACGATAAGCTCCAGGATgaacatttggaaaacaaagaacagaATGAGAAGCTGGAGGGCCTGTTAAATTACATGGAAGAGGAGAAGCATAGACTTCAGGataaagtgaaaaaaatgaCAGACACTGAGAAAGAACTGGTTCTGGAGCTGGAGACGATGAAGACTCAGCACGGGGTCTGTGGCCGGGACAAGTCGCCCTCGCGCCTCGACGCCTTTGTCAAGAATCTGGAAGAGGAGCGTGACTTCTACAGGTCGGAGGCGGAGTGTCTCAGGAGGGCGGGCAGAGGAGCCAGTCCATGGAGGAGCCTGGGCAGCAAGAGGAGCCCAGGCCGAGGCTCAGATAACAGAggcGCGGACTGTGAGGCGGAGCTTCTGCTGGTAGTGCGAGAGAGGGATGAACTACAGGGTCTGCTGGACAGGTTTGAGAAACACATGATGGACATCCAGGCCAACGTCAAAGTGCTCACAGCAGAGCGAGACGAGCTGAGCTTTCTCTACGAGCAGGCCCAGGAGGAACTGAGCAAGCTGAGGAGGGAATCCATGAGATCTCCAAAGTCCCAGCCGTCTGCAGCCAGTGCCCAGGCTGTGCTGCAGCAcgtggaggaggagagggaagagGCTGTGGCTGACCTCCGCAGGATGACGGCGGAGAGGGACAGTCTGAGGGAGCGGCTCAAGGGCGCTCAGACATCTGCTCTCATTgacagagaagaggaagaaCAAAATATCCTGGAAATGAAGAATACCATTCACAAACTTGAACGAGAGCGTTACGATCTCCGGTCTCAGCTGGCAACACTGAAGGAAAACAAGGCAGCTCTTGAGGACGAAATGAAGGCGCAGTCCAGTGCCCTGGCTCAGAGGTCTGATGAAGCCTCTCATCACAGGGCAGAGGCCAGCTCCCTCAGATTGCTGAAAGAGCAGACGGAGAGGTCCCTTTCAGATGCTCAGCACCGTCTTTCTGTGAAAGTCAACGAGCTTCAAAATGCCCTTGAAAAGATACAAAAGCTCGAGGAAAGATTAGctgATTTCAGCAGGCAGAGCTCATCTCAGCGGGAGGAAGTGGCCATGCTGCAGAAGACCATCTCCTCTCTGGACAGGGAAAAGGACAACCTGCAGGAGGCTGTGGACGACAAGACCGAGAGGATCGCTGCCTTAGAGGATAACCTGGCCAACAAGGAAAAGACTCTGACTGACTTGCGACTCACTGCTTCTGAGATAGAAGATTCACTAGAACGGCTGAAGGACACACTGAGCAATCGCGAGCGTGAAATTGCCAGCCTGCGGCGCCAACTCGATGTGGCTCGAGAAGAACTGGCGGACGTGGGCCATTCTCGAGAGATTGCACTGCGGGAAAACCGGAGGCTGCAAGAGGACCTGGCTACGATGACCAGGGAAAACCAGgcCATTAATCTAGAGCTGGAAGAAGCTATGCATCAAAAGGATGAATTGAAAACCAGGGTCCACACTTACATTTCTGAAGTGGCTAGGATAGAAAGCTTGATGGCTGCGAAGGAACAGGAGAACCACGATATCTTGGAGCGGTTCCGACTGGCCCACAGCCAGGCTGAGGACTGGGAGTTAAAGCTCCAGCAGGCCGAGGGACACAACAGCTCGATCAAACTGGAGCTGCTCTCCACTGACACGGAGAGGCGGCAcctgagagagagtgtgcacaacctggagagagagattcaAGAGGTACTGAACCATTTGAATGCACAACAAGCATATGAAACGCAGATCTCCTCTATGGCCAAAAACATGTCCCGGCTGGAGGATGAAGCAAGGCAGGCTCATGCAGAGAAGAACAGTGTTCTGTCCGACATCGCCTCTCTCAGGGAACTCTGCGTCAAACTGGACTCCAGCAAGGAGATGATGTCACGGCAGCTCACGTCTAAAAGCATGGAGTACGAGAGGGCCATGGGCGAGCTGGAAGATGTGAAGTCTGAGACCGAACTCTTGAAGAAGCAGCTCTCCAGCGAGAGGTTGACTATTAAGAATCTGGAGACGCTCCTGTCCAGTAACCGAGAGAAGGAGTTTCAGATCCACCTCAGCTCTCATGAGAGGGAATCGGAGCTGAAGATCCTGAGGGACCGCCTCACCTTAGCCGACAGTAAAGCTACAAGCCAGTCCAGGGAAGTAGCCCAGCTCAGGAGTAAAGTGACTCACCTACAATCAGAGCTGGACGTCCACAAGCGACAGCTGACGACAGAACGCTTTGAAAGAGAGCGTGCAGTGCAGGAGATGCGCCGGCAGGGGATCTCCTTCTCGTCCCTGCGGAGCCCGTCTCCTCTGAGCTCGTCCCTCAGCCCTCTCTCGCGCTCCCGCTCCCCTGAGCGCTCCATCCTGCGCTCCACAGACGGCACGGCGGACAGGTCCCCAGAGAAGAGTGTGAGTTTTAAAGAATAGATGGATGATACAAAGACTCCAGATTCCGCCCAGAAATCACACATCTCTACCTCTGTTACTGACCACCTCCAATGATCTACAAGATCATTTGTCATACTCTAAAAACGAATTTGTTTGCGTTTTATACTTAATCCACTGCTTTAGAATGCACTTGATtaatggtgtgtgtatatatgtatttaaaataaatctatgaagtttttttttatgccagTGAAGTTTTGTTCAGTCTAATTTCTTTGAAGGTCAAATATGTAAACATGGC

Function

GO: NA

KEGG:

id description
K16461 CEP135, CEP4; centrosomal protein CEP135

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017529 True 4146 mRNA 0.51 26 8663650 8677813

Neighbor

gene id symbol gene type direction distance location
AMCG00017524 NA coding downstream 36464 8607059 ~ 8627186 (-)
AMCG00017519 clocka,clock,LOC107701480 coding downstream 247171 8387062 ~ 8416479 (-)
AMCG00017516 NA coding downstream 313662 8329147 ~ 8349988 (-)
AMCG00017512 chic2,LOC101486940,LOC103353160,LOC107714214,LOC107562985,LOC102236523 coding downstream 502206 8142440 ~ 8161444 (-)
AMCG00017513 NA coding downstream 621196 8023656 ~ 8042454 (-)
AMCG00017530 ppat,LOC106560282 coding upstream 2000 8679813 ~ 8694359 (-)
AMCG00017528 NA coding upstream 24065 8701878 ~ 8730713 (-)
AMCG00017532 NA coding upstream 94396 8772209 ~ 8780221 (-)
AMCG00017536 LOC107683324 coding upstream 112369 8790182 ~ 8798194 (-)
AMCG00017537 NA coding upstream 137237 8815050 ~ 8834367 (-)
G91064 NA non-coding downstream 58024 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 281980 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 376533 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 434089 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 498745 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 917117 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 954832 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 984751 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 997733 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 999658 9677471 ~ 9680221 (-)
AMCG00017520 NA other downstream 148695 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 667055 7992137 ~ 7996595 (-)
G90937 NA other downstream 831058 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 984300 7668024 ~ 7679350 (-)
G90749 NA other downstream 1550469 7112436 ~ 7113181 (-)
AMCG00017531 NA other upstream 54947 8732760 ~ 8748743 (-)
G91119 NA other upstream 77475 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1683487 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2826211 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3199547 11877360 ~ 11900600 (-)

Expression


Co-expression Network