AMCG00017530 (ppat,LOC106560282)


Basic Information

Item Value
gene id AMCG00017530
gene name ppat,LOC106560282
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8679813 ~ 8694359 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017530
ATGGAGTTTGAGGAGCTGGGGATAGGGGAGGAGTGCGGCGTGTTCGGCTGTGTGGCTGCGGGCGAGTGGCCGACGCAGCTGGAGGTGGCTCAGGTGCTCACACTGGGGCTGGTAGCGCTGCAGCACAGGGGACAGGAGAGTGCTGGAGTTGTTGTAAGTGATGGAGCCTCACCACCAACTTATACTGCACACAAGGGCATGGGTCTGGTGAATGCTGCCTTCCAGCCACAGGATTTACTAAAGCTGCGCTACGGGAGTCTAGGTATAGGCCACACGAGATACTCCACCACAGGGATATCGGAGCTGCAGAACTGCCAACCCTTTGTTGTTGAAACGCTGCATGGAAAGATCGCTGTTGCCCATAATGGAGAGCTGGTGAATGCCCAGAACCTGCGTCGGAAGGTAATGCGACATGGTGTCGGCCTATCAACCAGCTCTGACAGCGAACTGATCACCCAGTTGCTGGCTTTGACTCCGCCCCTCGAGGAACTGGATGCTCCTGATTGGGTGGCTCGGATAAAAAACTTGATGACTGAAACTCCTACTTCATACTCTTTGCTGGTAATGCACAAAGATGTGATCTATGCAGTCCGTGACCCGTATGGAAATCGACCTCTTAGTATAGGTCGCCTTGTTCCCATTTCCAGATTACACAGCGCagGACACACCGATGGAGACACCGAGGGCTGGGTCGTGTCCTCCGAATCCTGTAGCTTCCAGTCAATTGGAGCACGGTATTACCGTGAAGTCCTACCTGGGGAGATTGTACAAATCTCGAAAGATGGAATTAAGACATTGTGTGTTGTGCCAAGACCAGAAGGGGATCTCCCAGCTTTTTGCATATTTGAATACGTGTATTTTGCAAGACCAGACTCAATATTTGAGGGTCAGATGGTGTATTCTGTACGGCAGAGGTGTGGCCGTCAGCTTGCCATTGAGGCTCCAGTAGATGCAGATGTAGTGAGTACAGTTCCTGAGTCAGCCACTCCAGCTGCACTGGGTTACGCCCAGCAGTCTGGGCTGCCGTATGTGGAGGTTCTTTGCAAGAATCGCTACGTGGGGAGAACATTTATTCAACCAAACACCCGGCTGAGGCAACTTGGAGTCGCCAAGAAGTTCGGGGCATTGACTGATAACTTTGCTGGAAAGCGAATAGTGCTTATTGATGACTCAATTGTAAGAGGAAATACAATTTCTCCCATCATTAAATTGCTTAGAGAAGCTGGTGCAAAAGAGGTGCACATCCGTGTGGCTTCACCACCAATAAGATTTCCTTGTTACATGGGGATTAACATTCCAACCAAAGAAGAGCTTATTGCCAACAAACCTGAATTTCATGACATTGCAGGTTACATTGGAGCCACCAGCGTCATTTATCTTTCTGTTGACGGGCTGCTATCGGCTGTGCAGGGTGGCATCCCTTCAGCACATGACGAAAAGGACAACGTGATGATCAATAGTAACAGCTCGGGGAACCACAAAGCTAAGCAGAAAGTTGGTCACTGCACAGCTTGTCTCACTGGGAAATACCCTGTGGAACTGGAGTGGTGAACGGACATTACGAAACAAAGGCTAAAGGAGTCCTACGATTTCACACAGATAGCGGTTATATTTGAAAAGCCAAGAGAGCACAAAGGTCATGGCCactcatccatccatctttttttttgtagttgccGGTTTGCTCACCAAGCCCCaaatttaaattgtacttttcaCCCAATTAAAGTCTGTACTTGGTGACTAAGCTCACATCTTGTTTTGCAAAGGAAGGTTTACAATAATCCACATTATGATATTTTTATATGGAACTAGTGTATTTCATTAATCAATTTGTTAGagaaaaaatagtttattgaatgATAATATTTGTTAAGGACTAATCACACTAGGGTATATTCACGGTTGCCCTTCATTTGTTTTCCgcctgatttgtattttatgttgttgttttttaatgtgtggtAGTCCGGATATAATTGTCCTATGAGACCACACAATGTGTCTGTACCAGTACATTGAAACTAGTGTAGAATCACAGTACAAAAGGTTATTCTACAGGTTTCTGATAAGTGGCTTGCACTGCGGTACTTGTGTTAAGATCCAAAATGTTATCTTTTGTGATTTTAGGCCCAAacgtttaattttgtaaattacccatctgatttttttatttttatttcattgtatttccaAATAATAAAGCCAAAGGTCATGATACATGAGTTCACTAGTATCCTCTTGTCTTTTGTTATTGGCATCTTCATTCTGCAGTTTATTGCACTAGGTCCAGTACTGTCAACATGGGACCAGAACCTAGAGCAGATTGTGGACCAcaatttttcaaatttaaacctgattttgtttctttttgtagcCAATGGCACCATGCGTTTTCTGTATCATTTATACTGAAGTGTCATATATTCAGATAAAACAAACGCAATAAGTGTGCACAGAAGTGTGAAAGCCCTCATAGTTTAAAACCGCTATAGAAGAGGTGGAAAAAAGCAAGATACACCTTCActaaaagtaattaatattttcttagaGTATACTGAAGTAGATTCTTTATTCTTgacatttttttacaatgttaGAATCTTCTGATAGACTTTGTAAGGTGATTTTGATCAAAGTAGATTGTACTGATCATGTAAATCAATGCTGaaggattaaaatgtatttctcaatgtaatatttttgtagTATTGTAACATTGTTATTGAGTAGAAAACCTTTTATATTCTATGATTAAAAGGGGATAATATCcactatttgtattttgtgttactGATCCTAAATGCACAATATTGtattagagcagtggttctcaaactgtggtATGCGGAGTGCCCCCAGGTGGTACGCCTGACTACCTTGTAATATGTTGTGTGCATAgaaaaaattgtaattaaaataataataaaatctatgtaaattc

Function

symbol description
ppat Predicted to enable amidophosphoribosyltransferase activity. Predicted to be involved in purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and purine nucleobase biosynthetic process. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human PPAT (phosphoribosyl pyrophosphate amidotransferase).

NR:

description
PREDICTED: amidophosphoribosyltransferase-like

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG:

id description
K00764 purF, PPAT; amidophosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017530 True 2944 mRNA 0.42 11 8679813 8694359

Neighbor

gene id symbol gene type direction distance location
AMCG00017529 NA coding downstream 2000 8663650 ~ 8677813 (-)
AMCG00017524 NA coding downstream 52627 8607059 ~ 8627186 (-)
AMCG00017519 clocka,clock,LOC107701480 coding downstream 263334 8387062 ~ 8416479 (-)
AMCG00017516 NA coding downstream 329825 8329147 ~ 8349988 (-)
AMCG00017512 chic2,LOC101486940,LOC103353160,LOC107714214,LOC107562985,LOC102236523 coding downstream 518369 8142440 ~ 8161444 (-)
AMCG00017528 NA coding upstream 7519 8701878 ~ 8730713 (-)
AMCG00017532 NA coding upstream 77850 8772209 ~ 8780221 (-)
AMCG00017536 LOC107683324 coding upstream 95823 8790182 ~ 8798194 (-)
AMCG00017537 NA coding upstream 120691 8815050 ~ 8834367 (-)
AMCG00017535 NA coding upstream 142494 8836853 ~ 8843458 (-)
G91064 NA non-coding downstream 74187 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 298143 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 392696 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 450252 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 514908 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 900571 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 938286 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 968205 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 981187 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 983112 9677471 ~ 9680221 (-)
AMCG00017520 NA other downstream 164858 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 683218 7992137 ~ 7996595 (-)
G90937 NA other downstream 847221 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 1000463 7668024 ~ 7679350 (-)
G90749 NA other downstream 1566632 7112436 ~ 7113181 (-)
AMCG00017531 NA other upstream 38401 8732760 ~ 8748743 (-)
G91119 NA other upstream 60929 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1666941 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2809665 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3183001 11877360 ~ 11900600 (-)

Expression


Co-expression Network