AMCG00017531



Basic Information


Item Value
gene id AMCG00017531
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8732760 ~ 8748743 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017531
CGGCAGTGAAGAGAGCAGCGGGACTGACAGATGCACAGGAGCTGGACAGACAGAGAAGTGCCACGACAGGACACACAGTCTCCCAAGCTAGTTCGGGACggacagaaagaaagacagtctctgccctgtgtgtctctgaCAGGGTAGAGGATGGAGTTTGCCTGCAGTCATGTGGTGTGTAACTGGCAGCCAGAGCCCAGCATTCCAGTGCCAGGCTCCCCAGCTGCCCTGTGCCCACCAGTGCCCATGCGTGCCAGCTCTGCCAGGATGAATTCAACACAGACCCTTCCAGAGAGACCCAGGTCCAGTCACTACCATGACTACGACAACCGCATCTCCTGCATGTCACGCAGCAACCAGAACCGGCCAGCGGATATCCAAGTGACCCCTCCGCCCCTTCCCCCTCGGCTCGGAGACCGCAGCTCGAAGTCACAGAGATACCAGAGGCCCAACTCTTTGCCGCCAATTCCCAGCACCCCGCCTCCCCTGCCCCCACGTGGGTCCTGCAGCAACACTGAGAAACAGCTCAGTGCCAATGTGAATGTTGTGTCAGTGAATGTAGGCCGGCTGGTGGACATCACTAACACGGCAGCAGAGGAGAGGAGTAAGCGCCCGCTGTACTGCAAAAGCTGCCGCGCCGCCATGTCGGGTCTGAGCGTGCCCCGGCATCGGCAGCAGAGCATCATCTGGTGCTGTGAGTTCTGTGGGAAGGAGAACACAATCTCCCAGCCGAGCCCTCGCCTCCCCTTGGCCCGAGACATGCTGCACGTGAGTGAGGAGGCAGATGGAGACTACGTCAACTTGGAGGACATGCTGGTGGTGTTCTGTGTGGACATCTCAGGCAGCATGAGCGTCACGACAGAGGTGCCTGttgcaaacaatataaaaactcCAATGTACGTCTCCAGGCTCCAGAGTGTCCAGGACGCCCTCCATAGGTCGCTGTCCTTACTGCTGAAGACCTCCCCTCGCCGGCGGGTCGCCCTCGTCACCTTCAACGATGAGGTGACGGTGTACGGGGACGGGACGGGGGTCCCACTGACACTGAGGGATTGGGGGCTGCTCGACTTTGACTACCTGAAGGACCAGGGGGAGACCTTCACAACCCCTCACTGCATCGCCGAGAGCATCAAGGCACTGAACCAGAGAGTGCACGAACTACAGGAACATGGAGCCACAGCACTTGGCCCAGCAGCACTGGTCTCCATTGCAATGGCTTCTAGATATATGGGGTCAAAGGTGATAATCTGTACTGACGGACGAGCCAATATCGGCCTGGGGGACCTGGAGGACGAACCAACGCCCACCTCTCGCTACTTCTACACCCGCCTGGCAGAGGAGGCCGCAAATAAGGGGGTCATCGTCTCTGTGCTGACCTTTGAGGGCACCGACTGCAGACTGGTGGAGGTGGGCAGGCTGGCCGACCGCACTGGAGGGAGGGTGAACATAGTCAACACCAGCAGCGTGTTGTCTGAGATCCAATCCGTTCTAGAGGACGACATCATCGCCACCAGCGTCAAGGCCACCCTGCTGTCCACAGAGGGCGTGTTCTTCCCCCATGAAGAGAACTCAACACACAAGCTGGTGAGGGAGATCGGGAACGTGACTGAAGGCCTCGAGATCACCTTCGAGTTCGCTGTCCAGCCCTCCGCTGTGGACAGCTTCCTGCGGAGGGACAGAGTTCCCTTTCAGCTGCAGCTGGAGTTCAAGACGCGTGAGCTACAGAAAGTAACGCGCATCCTCAACGAGCAGAGAAGAGTCACCACCAGCAGCTGGGTGTGGGTGGGCAGTCTGAACATGGGCGTGCTGGAGGTGCACTGTGCCCAGCTGTGTGCCCGCCTCACCATGGAGGGAAGAGTCCTGGAGGCACAGAGACAGATTCATGCACAACAGGAGCTCCTGAAGGAAATCAGTCAGAAAGAGGAGTGCGTCTATGGCAACTGGATCAGCACCATGAGCCTGATCTGCCAGGATCTCACTGGGGACAGCAAGGTCAGGATGCTGTCCCAGCACACAAACTTGTCTGTTTTCTctaCCAACGTGGTGTACCAACTGAAGAGGGCAAAGAGCATCGTGCTGAGGAAATGCCATGTCCCCAGCCTGGCCATGTGA
>TU113678
AGTGAACATCAGCCCAGTCAGAAAGAGGAGTGCGTCTATGGCAACTGGATCAGCACCATGAGCCTGATCTGCCAGGATCTCACTGGGGACAGCAAGAGTAACAAGGAATCTAAAGGATCTTCACAGGCTAGGACTGCCCCAGTGAAGGGCCTTTCGGACGAGGCAGCCAACGTGGTGTACCAACTGAAGAGGGCAAAGAGCATCGTGCTGAGGAAATGCCATGTCCCCAGCCTGGCCATGTGATTCACCGCACAGATGCAACCTTACCAAACTTACTGTAGTGCACCTCATTGAAACCACAGGGAATGTAGTACAGACTAGCACAGAgctgtacagcacagcacaacacatgGTGAGGCGAAGTAAATGCACTGGAGTTGCACTGGAGGAATCACGGTCAATTATACAATTACCATTCAGGCTTAATACTGGAAACTTTTATATGAGTTGCTGCTGAGAAAATGGCAGTTTGAGAAAGGGCAGCTAAGAGACTCTTCGACCAATCACTCTGCCCCTGCTGCCGTCTCCACACTGTGCACATCCCTACTCTTGAACTGGGACAATTTCTCCCTCTGCCTTCCAGCCCCAGTCAGTCCCGACATACAATCTGTCTATCAAACTATAATTGTACTGTGGACAACAGACAATATTTCTGTATCAATGTAAAGTGTCGTCTGTCTAATTGCCAGTGTTGTTGATTCTGTGTCTTAGTTTCAGTGGTTTAATCTTCATGAaaccacctttttttttttattcgtTTTCCTGTCTGACTTCCTGGTTATTGACAGCTCATTTGATTGGCAAGGCTTTGCAGTCTGAATGtaccatttgcaaatccaaaaAAAGTAGCTCAACTTATTGTCTATATCCTGAGAAGAAATACTCTGAAAATGCctga

Function


GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017531 True 2112 mRNA 0.58 19 8733415 8748743
TU113678 False 898 lncRNA 0.45 3 8732760 8735232
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00017528 NA coding downstream 2047 8701878 ~ 8730713 (-)
AMCG00017530 ppat,LOC106560282 coding downstream 38401 8679813 ~ 8694359 (-)
AMCG00017529 NA coding downstream 54947 8663650 ~ 8677813 (-)
AMCG00017524 NA coding downstream 105574 8607059 ~ 8627186 (-)
AMCG00017519 clocka,clock,LOC107701480 coding downstream 316281 8387062 ~ 8416479 (-)
AMCG00017532 NA coding upstream 23466 8772209 ~ 8780221 (-)
AMCG00017536 LOC107683324 coding upstream 41439 8790182 ~ 8798194 (-)
AMCG00017537 NA coding upstream 66307 8815050 ~ 8834367 (-)
AMCG00017535 NA coding upstream 88110 8836853 ~ 8843458 (-)
AMCG00017539 NA coding upstream 221448 8970191 ~ 8972241 (-)
G91064 NA non-coding downstream 127134 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 351090 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 445643 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 503199 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 567855 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 846187 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 883902 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 913821 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 926803 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 928728 9677471 ~ 9680221 (-)
AMCG00017520 NA other downstream 217805 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 736165 7992137 ~ 7996595 (-)
G90937 NA other downstream 900168 7830885 ~ 7832592 (-)
AMCG00017497 NA other downstream 1053410 7668024 ~ 7679350 (-)
G90746 NA other downstream 1544112 6733235 ~ 7188648 (-)
G91119 NA other upstream 6545 8755288 ~ 8755907 (-)
AMCG00017556 NA other upstream 1612557 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2755281 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3128617 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3559038 12307781 ~ 12322370 (-)

Expression


AMCG00017531 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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AMCG00017531 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00017531 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network