AMCG00017533 (sgcb,LOC107597442,LOC106584109)


Basic Information

Item Value
gene id AMCG00017533
gene name sgcb,LOC107597442,LOC106584109
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8799335 ~ 8806468 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017533
CGGGGCTTTGGTGTGGCGCGGTGCTGTGGGTGGCTGGTGCGGAGGACGGGATGGTGCGGTCCGGCGTCTGTCGCCAGCTGTCAAACCGTCCGGGAGCGGAGGGGGAAGGAGCATCATGGCGTCCGAGCAGGAAAGCTCCAACGGTCCTGTGAAGAGGTCCATGCGAGAGAAGGCCATAGAGCGCAGGAGCATTAACAAGGAGCACAATAGTAACTTCAAGGCTGGCTATGTGCCCATCGAGGAGGAGAGGCTGCACAAGACTGGCCTGAGGGGCAGGAAAGGCAACCTGGCCATCTGCATCATCGTCGTCCTCTTCCTGTTGGCTCTCATCAACTTGATTATCACGCTCGTGATTTGGACAGTGATTCGCATCGGCCCCAACGGCTGTGACAGTATGGAGTTCCACGACAGCGGCCTACTGAGGTTTAAGCAGAAGTCTGACATGGGCGTGGTGCACCCCCTGCACAAGAGCACCGTGGGGGGCAGGAAGAACGAGAACCTCGTCATCACAGGGAACAACCAGCCGGTGGTTTTTCAGCAAGGAACCACTAAGCTGAGCGTGGAGAAAGAGAAGACCTCCATCACCAGTGATATCGGGATGACGTTTGTGGACCCTCGGACCCAGACGACGTTCTTCAGCACAGACTTCGACAACCATGAGTTCCACCTGCCCAAGGGGGTTAAGATACTCAACGTGCAGAAGGCCTCTACTGAGAGGATCACAAGCAATGCCTCCAGTGACCTCACCATTAAAGTCGACGGCAAAGCCATTATTCGTGGCAATGAAGGCGTGTTCATCATGGGAAAAACTGTCGAGTTTAGAATGGGAGGAGATATAGAGCTAAGGGCTgAGAACAGCATTATCCTGAACGGCTCCGTCATGGTCAGCCCATCTCGAATCCCCAACTCTTCCACCGGGGGGGAGCTGTTCTTTGACGAGGGCATGGAGCGCTACAAGCTCTGCATGTGTGCGGACGGGACTCTGTTCAGGGTTCAggtgaaaaacaagaacatggGCTGCCAGACCTCGGACAACCCATGTGGAGCGGCTCACTGAGGATCGGACGGACGCGCGCTATGAGCCGCTTCAGATGGCCCTGCCAGAGCAAATTAAGTCCCGCCTTCAAAGAGAACAAGTAGAATAAGACTTTCTCTAGTGCAGTGATTCCCATTTTCAACCTGGGAAGACTATTGACAGCCCAGGTTTTTGATCCATCCAATTTATAAAGGTTCATGCTCCAATCTTTATGGGAAATATGTACAGTGCATGTCTAGCATACTAAAAAACCTTTTGTCTTTCCATAATACTCTTTTATAACTTGGCAAATGAAGCCTGAGGGCTATCAGAAGGGCCCCAGGGAAACACTGCACTAGGGATGgcacacatttttatacatatattgtgttttatacCGATTTGCTTTTGTGCAACCAAAGACAtagggattttattttactgtactttttACAGGGCtttgaacatttgaaaaaatgcaTGCAGGATGTTTTTGTATGTCAAATATTACCAGAACAGTATTATGTTTTGAGTGacagatgtttcttgtaaaatatgtgtattaaaCAGATGCTGGCTCTTAGAAGACAGTCCTTAAAAGTGTCCAGTAATATCTGGTTATACTGTGGTGATCAGGGAGCAGAACCCCCTTATCAGCTTAGTTTTAAAAAATTATgttatttggtttaaaaatatgaaatgtcagCATTATCCTCTGATCCAGGGTTTCCCAAATCGGCCCTGGAGGAcaccctgtcctgctggtttttattccagctgagagctcaattgcttaattgaatccttaatttaactaacaatgcaatataaagctcaattatgtaattaagagcttgaTTGAAAccaaaatcagcagggcaggggttcctacaggaccggtttgggaatccctgctcTAATCAAACCGTTATGTTAATTCACATGACTTCACAGAAAGTGACAAATACCATTGAGTTTTACACAAaagtatatatactttttatagtatatgtttttttttttgtattcctgtcACATCTCAAAGATAGGTGACATGATtcatcagtattttatttaagttaatttattgaATAACTGTATAtcaaacagtgttttttttaaaggtctaGGAAACAAGTTTCATTGCCGTCCAGATTGTCAGTGCACTCCTCATTAGGTTTGATTAGTAGCGCTTGTACTGATATGCATCCCTGAGTGTCCTTCAGTTTGTTCTAGTGCCAAAAAGTATTAACTTAAAGACATTCAGTGAAACGTCCTCAAACGgtttattctttgtttgtttaatgttttggttgctgttgttttttaaacttacaAATTGCAGTACATACTTTACTGAATATGATCATATTTTATGATACTTATATTTTCAGTGGAAAAGGAACTTGCACTGACATTTGATGATACTAAAActgtaaattagttttaaacAGTGTTATGCTTATGCTGAAgcaaattcaaacaaaactcATGACAGATTTGATTAATTGTGCAATATAACCTTCATAGTGCTGTTTAATAAGCAAGGCTATTCatctctatatttattttgagtgtGTTTTCTAATGGCAATACCTGTAACTTTTTACATGGGAAttttcaaatgagaaaaaatcATCTTAGAATGTATTAATGATTATCCAAGagaatactgtttttaatattttttcatgaagTGAATTTGATTTCCTCTGAAGGTTGTTAATATGCATTAAAGGGGGGTCCAGTGGACTCTGACACTGCAGGCTGTGTCTGGAGAGGCGGGACACCCAGTGGCTTCTGACCGTCTTGTCCAGGAACCATGACGGAGAGAGTGTGGTGCTTGGACTGTCAATTGCCTTTCTCCAAATGTTGTGAAAAGGATCTATTGGGGATGTCCATCCATTATCATGGTGTAGCGCCACACAAATTGTATCTCAAATCATCACATGACGATACTAATGTTTGCTAAGTTTGCAATAATAAAGAACAGTGCTGTTTGAAATTTTAAAAAGGTGTATTTCTTTTCAGTTACTTGGTTTAATAAGATACAGATCCATACAATACAGACCTATGTAAAATAgcttaagatttttttttcttctttacaaaggtgtgtgatttaaaagaaagttaaaaGGGGAGCTCATGctgttaattttatattttcctccaccactaaaatttaaatattgtttatcaaACTATTATCTACTTCTAATTTAAGCATTCCTATTGTGCTTAAATTCAGCGGTTGCGGTGCAATATACTTTGTTCCCGTGCAATGTATTGCTGCACTTGCTTCACAAATTTTGTAAACTCTGGCTTGATATAAAAG

Function

symbol description
sgcb Located in sarcolemma. Is expressed in somite and trunk musculature. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2E and muscular dystrophy. Orthologous to human SGCB (sarcoglycan beta).

NR:

description
PREDICTED: beta-sarcoglycan

GO: NA

KEGG:

id description
K12566 SGCB; beta-sarcoglycan

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017533 True 3353 mRNA 0.42 6 8799335 8806468

Neighbor

gene id symbol gene type direction distance location
AMCG00017523 NA coding upstream 144993 8647446 ~ 8654342 (+)
AMCG00017521 NA coding upstream 197680 8591169 ~ 8601655 (+)
AMCG00017522 exoc1,LOC106560275 coding upstream 212664 8567667 ~ 8586671 (+)
AMCG00017525 NA coding upstream 233524 8560132 ~ 8565811 (+)
AMCG00017517 tmem165,LOC106584122 coding upstream 417665 8376824 ~ 8381670 (+)
AMCG00017534 NA coding downstream 547 8807015 ~ 8808994 (+)
AMCG00017538 fryl coding downstream 62646 8869114 ~ 8969478 (+)
AMCG00017543 NA coding downstream 211411 9017879 ~ 9021042 (+)
AMCG00017544 NA coding downstream 280109 9086577 ~ 9103203 (+)
AMCG00017545 NA coding downstream 321295 9127763 ~ 9147339 (+)
G91128 NA non-coding upstream 15246 8783867 ~ 8784089 (+)
G91104 NA non-coding upstream 66703 8732368 ~ 8732632 (+)
G91004 NA non-coding upstream 512607 8286292 ~ 8286728 (+)
G90991 NA non-coding upstream 569759 8229315 ~ 8229576 (+)
G90924 NA non-coding upstream 809375 7989696 ~ 7989960 (+)
G91135 NA non-coding downstream 13245 8819713 ~ 8824837 (+)
G91151 NA non-coding downstream 32179 8838647 ~ 8841038 (+)
G91307 NA non-coding downstream 1360062 10166530 ~ 10166747 (+)
G91310 NA non-coding downstream 1490934 10297402 ~ 10297808 (+)
G91329 NA non-coding downstream 1761710 10568178 ~ 10568428 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 34432 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 98581 8687697 ~ 8700754 (+)
G90955 NA other upstream 666481 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 985696 7806378 ~ 7813639 (+)
G90881 NA other upstream 1105988 7692585 ~ 7693347 (+)
G91281 LOC103376870 other downstream 713305 9519773 ~ 9583280 (+)
G91452 cc2d2a other downstream 3073146 11879614 ~ 11880499 (+)
AMCG00017600 NA other downstream 4390427 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 4974798 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 5219168 14025636 ~ 14039063 (+)

Expression


Co-expression Network