AMCG00017535


Basic Information

Item Value
gene id AMCG00017535
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8836853 ~ 8843458 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017535
GGAGGTCGGCGGAGGAGTGCGCGGTGCAGGGCTGTCGCCTGGCTGAGTGTGTGGAGCCCAGGCTAGAGCTCGGGTGTGTGGGTTGTGGAGGTGGACAGCGGTTGAGCTTCAGTTATCATGTCTCAGGCTTCTGCAGGGTTAACAGGCTCCCGACAGCAGCATGGGGGATCCCCTCAGAATCCTCTGGGCGTGTCTTACATTCCTACTGAGGAGGAGAGAAGGGTCTTCAAAGAATGTAACAAAGAGAGCTTGTACTATAGAtCTCTGCCTTTTTCCGCTATAGGAATGGTGGTCACACGGGTGCTCATCTCCAGAGgAATACTTACCTCCTCGCCACGGTTTGGACCTATGCCCAAAGTAATGATTGCTGGTGTTTGTGGGTTCCTGGCCGGAAAGATGTCCTACATGAGAACATGTCAGGAGAAGTTTAAGAGCCTGGAGAATTCCCCGCTGGGAGAAGTACTTCGGCACCGCAGCCTGCCTCCTCAAGCTCAGAGACCAAACCAGGCAGAGGAGACCCGAATGGAGTTGGAGTCAGAGTACACCCTCCCCCAGAGTTCCCACAGCCCGGCCGACTCCTACTCTCCCGATTTCAGTTCCTCACTTCCAGAGTCGTCATACGAGCCCCCCCCATTCAGCTCAACCATGAGTGAGTCTGCGCCCTCGGGGGTGGAGGAACTTGGTACACAAGCTCCGCTAGTGTACTTGGACGAAGAGAAGCCTAAAAAGAAATCGATCATGTACGAGCAGCTACGCAGTAAAAACCGGGAGAACTACGAAGTCACGATGACTCAGAAAGCCGAGACGCTTATGAAACCATCCCCGGAAAGAGCTCCTAAAACAGAAGtaaagaaaaacatatatggGGATACCTGGGAAGAATGAGACAGATCTGCTGAAGAAAAGGAATTATTACAGCTAAAATAATGATCATGCAACACCAATCTGTGATAGATTTGAACTGCTCCAGACATGGAAGACAGCACAGGATCAATACATGTTGTATTCTAAATGCTCCCATTGAATTCTGTATACTTTGCACTTCATAAATGTTAATGAAGTCAGCTTTTGTTCAGTTTTAGTCACTGTCTCTCTTCTGTCAACTTGACAAACAACAGGGTGTGTTTGGTGTCTGTTTAACTCGACATTTTGATCAGGTTACCACATTaaatcaacatcaacaacaaaattataaaaatagatGGGGAGCTTAAACGATCATCATTTGAGATTATTAGATTGCAAAACTACTTTAGACTCTCTAATAGGAATCTAAACATACTCAGGACTAAATGGGACAATGACTAAAATGGATCAAACACAGACTGAATTTACACTgctttataacatttaaaatgtaatgaagtgTCAGCTGAGTATTTCTTTGTAAACATTGTcctaaatacaactttaaatcCAAAGTGCTTTCATAGATGACtgtttctaaatgttttctgcttaacaataataaaaaaaaaaaaagatctgttcAGGACAATTGTTTCTGTCTTGCAGTTCAAAGAGTCTGTATAGTAATTGTAGCTAATCTGGGATAAAGGtgaatctatattttattttgtattgcgtATTTGATTGCCTATGATCGCCAGAGCATTTTAAGTGATTGTTTGTATCATACGGCTGTGGCTTTAATTGAACTTGAGCAATATGGGTTGAGAATGTTGCATCTTGGAATAtcctgtacatttaaaatcatgacCACTTTATAAATGTCAATCAATTTACTTTAAAGACCTTGCACTTATTCGTCACAACAATTTGGTATATCATTAACATTTGTTCATCCCAAAAGTAGGTGTTTACACAGAATTCATTCTACCCATGTATCATCCTGTCTTTATTACAAACTGCCATCATGGACTCATtcgttagtttgttttttaatatgatgTGCTTTGCTGTACAAATCTTTGCTAAATCTCCCCCAAGTTCTGTTGAGTTAAATTTAAGTGTagtgtatttaatcattaagaTTGTTAATATTGACTTTATCTATACACTCATGAAGAAGATAAATATTGTGTTGCAAgatgttaatttgattttaaacccGGTCCAAGAAGATAAATTattcagattttcttttgtgtttgctGACGTCCATTGTGAGCTCATTGCTTTGATGCGTCTCCCTCTTGTAGATGCCTAATTCATATCTATGTAGTGCAGTAAATGTTCACATTAATGCTGCTACAGAACAGGACATAAAAACAGACATTCCCCTACATTTAGTTGCAAAAATGCCTGTAGTAAAATATATCtgaataaatcacattaaattaTTTGGTGGCTATTTGAAAAGTTACTGAGATCCTTACTGATCTAAACCTTGTCCCCAGGGGAGAtctgcacaacacagcactagacattatttgtacatttgcctTTGGAAAGGCCCAGGACTAAATGGCAAAGTTCTTATCCTGATATGTTTCTGTGATGTTCTGGAAActattgtattataatgttattCAGAACACAATTTATACGTGGGAGCCCCAAAtctttttgtgtttataaatgagCACTTCTATAAAAACTCAAAAGCCAAGTGCAACTATTCAAGGCTTCACGAGGTGTTGTGTATTTAGGCTTCATTGAAGTCTGTTTTCATAATGTTGTCAGCcgtgaaaaggaaaaatattctTGTCTCTAGTTCACATTGCAAGACTTACTTCCTTGCTTGCTCCCTAAACACTGACTACTTCTGTATTACTTTTTCTCATCTTAAATCTTCTTGAAGGCTCTTAGAATGGCATCACAAGTGTTTCaatgaattaaatgcattttcagtcaAACTGGGACCTGCTATTGGGTGTAGTTGAAAGCTGAATTACCAGCCTATCGATGCAAACAAGGTCCTGTTtgcacagggcagagcacaTCAAAATTCAAATACTCTTAGTGGAATGGACCGTGACATGTTCAAAGATCACTTAGTTTGCCTGGCTTTCAAGATTTAATTCTGTTTCTTAAAGCAATGTATATGCGAGGCTTGTAAGCTTTCAAAGGAACTGGTATTTTCCTCCCCTAAACCGTGTGctctgtgctttaaaaacaagatgagttctgcattttgaaaataatccgGATTACAGCAGAAACCACTTCCAAATGCTACAATCTCTGAACAACCTTCTCGGTGCCCAATCCATGAGTTTTCATCTGGATAGGGctcctttcattttattttccccccaacATCGTCCTTTTTAATAACCATCCAAGCCTACTGTAATACAGGGTCAAATAGATCGTTCCAAGCCTTATATGATAAATGGCAGAACATTTCAGTGAAATGCAcccttcaattaagtaaatagatttttaaattggaaaatagTGTGTTTAATGTCTTAAAAACTGGCTGTAATATGTATATTGGTATTCACTGGGGTGTGATATAGTGCTTCCAATGTATATCTTCTGGGATGAAGTGTGATGCATCTGTGAAAGTGTGGTTTGTTGCCCTCTGCACTACACAACTCTGGCAATTTTGCTGGATGACTGGGCCGCAGGAATTTTCTATCACATTAGACACTGAATGTGACATTTATTATGAAGATAAGGCAGAGAAGAACTTGAATatgcagtttatttgtattagatTTGTGAATTGAATAAACTGGATCCCATGTATAGTTCATAGTGATTagcataaaatatgtatatattattttgggtTGATATGACAAATGAATTCACTGTcgatacattttaatgaagtgaGAATTTAAAGAAATCACAACATAgaacacaattacataaattagaatgttaatgaaatattaataatacacgATGTTGTAATCCTATCAAAAAAGTACCAATATGACATATGTTTCTCTGGCCCCAATTTCTGCCCCAGAGAAAAGTGTGCTTCTGTAAGACAAATggtgtttaattaatattcaataATGAATGCAAATCCAAAGCCCAGTGTCCATAGTGAAGGCTAATCTTTTCTAAACttcctgaaatacatttatacccTTTATCAGCGGCGCCCTCTGGTGGAAATCTGAAGTATATGTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017535 True 4059 mRNA 0.39 8 8836853 8843458

Neighbor

gene id symbol gene type direction distance location
AMCG00017537 NA coding downstream 2486 8815050 ~ 8834367 (-)
AMCG00017536 LOC107683324 coding downstream 38659 8790182 ~ 8798194 (-)
AMCG00017532 NA coding downstream 56632 8772209 ~ 8780221 (-)
AMCG00017528 NA coding downstream 106140 8701878 ~ 8730713 (-)
AMCG00017530 ppat,LOC106560282 coding downstream 142494 8679813 ~ 8694359 (-)
AMCG00017539 NA coding upstream 126733 8970191 ~ 8972241 (-)
AMCG00017540 slc10a4,LOC102785779 coding upstream 130157 8973615 ~ 8976665 (-)
AMCG00017541 NA coding upstream 133780 8977238 ~ 9013172 (-)
AMCG00017542 LOC107735811 coding upstream 177675 9021133 ~ 9034005 (-)
AMCG00017546 LOC107736140,LOC107682575 coding upstream 307386 9150844 ~ 9156267 (-)
G91064 NA non-coding downstream 231227 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 455183 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 549736 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 607292 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 671948 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 751472 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 789187 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 819106 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 832088 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 834013 9677471 ~ 9680221 (-)
G91119 NA other downstream 80946 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 88110 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 321898 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 840258 7992137 ~ 7996595 (-)
G90937 NA other downstream 1004261 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1517842 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2660566 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3033902 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3464323 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5589700 14433158 ~ 14484818 (-)

Expression


Co-expression Network