AMCG00017536 (LOC107683324)


Basic Information

Item Value
gene id AMCG00017536
gene name LOC107683324
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8790182 ~ 8798194 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017536
ATGGCTGACACACTGAGGAGACTGGCGAGCACCGCTCCGTACTCTCTTCTGCAAGACAAACTTGAATCCTGGTACAAAGATTATCATCTCATCTCCTGTGACCAAAATTTGAACCGGTGCTGTGAGCTGGTGGAACTCACCTCAAAGATTCAGGGACAGCTATTCACCATCCTGAACCTCACTGCCAGAGAAGGCGGGCATTATGCGGGGGTTGAAACACTGAAATCTCGTCTCTTGCCGTGGCTGGGCTCTTGTTTCACTATGGCCTCTTCTGGAGTGACCTCGAATACCAGCCTTAATCTGATCCAGGAATcaatggagaaagaaaagaagataaGAGAGCTTTCTCAATCCCACgaacatgaaatacaaaagatGGAATCACAGCTGAATTCGACACGTTATCAGCTGGACTCTGTAAAGCAGGAATTGGAAGATGCTCAATTTGAACTTGATGATACCAAAAATAAGTCAGCAACGACACTACTAGCTACAGAGGATGAAATACTTCAGCTCAAAGCCGAGCTGCAAGCGGCGTGTGATCAGGCTGACCTGTACAAGCGGAAGGTAGATGTGCTGGATGACTACGAGAGACAGATCCGCATGCTGAAGGAAGAGAGCAAGGGTTTCCAGCTCAATTCCTTTGTGCTCTACCCTGTGTCTGCGTGCTCCAGGCTGACACGGAGCCGCTCCCCCAGCCCCTTGCCTCGCCGCAGCCGCTCCCCCAGCCCCCTGCTGAGGAGCGACTCCCCGACCCGAGCCCAGCTCACCAACTCCTCTCGGCACGCTCGCCTGGTCTCGCGTTTCAGTGACCTGTACACCACCGAGCGCCTGGAGGCCCAGAGCCTCCTCCGCCGCTACATAGAGGACCTGGAGATGGTGCAGAGGATCATATTCATCGCCACTGTGGAGTCCTTCCATGCTGCTAAGATGGCCTTCAGACAGTTCAAACTGCGAGTGAGGAagactctctctcccacacacatgGGCCCAGAGTCACTGGATGATGCTGTGGTGGACTACATTGTTAGAAATCTGGACCTCTATGACGTGCAGTCCAGTGTCAATGAGGTGATCAGCGCCATGAACGTGAATCCCAAGATCTCCTTCCCCCCAGAGATTGATTTCATCCTCATCGGCAGCTTCATCCGTGAAGTGTGTCGTGTGGCCTTTTCCATGCAGACCCTGGAGCCCCCCCTGGACCTGGCCTTCACCACAGATGGAGAGCTGTACAGCGACAGCAAGTATCGGCGCAGTTTTGACTCGGAGTACACGGCTCCGTTGGTGGCATACCACGTGTGGCCGACGCTGATGGAGGGAGACACTGTCATAGTAAAAGGAGAGGCCGTTACCAAGAGGGGAGCTCTAGGCTCCAGTCGCAGCCGCAGTCCCTCACCAGGCCGCCTGTCCCCCAGCCGTCTCTAA

Function

NR:

description
PREDICTED: mitochondria-eating protein-like, partial

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0035694 mitochondrial protein catabolic process biological_process
GO:0035695 mitophagy by induced vacuole formation biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K22257 SPATA18; mitochondria-eating protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017536 True 1425 mRNA 0.54 11 8790182 8798194

Neighbor

gene id symbol gene type direction distance location
AMCG00017532 NA coding downstream 9961 8772209 ~ 8780221 (-)
AMCG00017528 NA coding downstream 59469 8701878 ~ 8730713 (-)
AMCG00017530 ppat,LOC106560282 coding downstream 95823 8679813 ~ 8694359 (-)
AMCG00017529 NA coding downstream 112369 8663650 ~ 8677813 (-)
AMCG00017524 NA coding downstream 162996 8607059 ~ 8627186 (-)
AMCG00017537 NA coding upstream 16856 8815050 ~ 8834367 (-)
AMCG00017535 NA coding upstream 38659 8836853 ~ 8843458 (-)
AMCG00017539 NA coding upstream 171997 8970191 ~ 8972241 (-)
AMCG00017540 slc10a4,LOC102785779 coding upstream 175421 8973615 ~ 8976665 (-)
AMCG00017541 NA coding upstream 179044 8977238 ~ 9013172 (-)
G91064 NA non-coding downstream 184556 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 408512 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 503065 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 560621 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 625277 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 796736 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 834451 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 864370 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 877352 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 879277 9677471 ~ 9680221 (-)
G91119 NA other downstream 34275 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 41439 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 275227 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 793587 7992137 ~ 7996595 (-)
G90937 NA other downstream 957590 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1563106 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2705830 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 3079166 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3509587 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5634964 14433158 ~ 14484818 (-)

Expression


Co-expression Network