AMCG00017539


Basic Information

Item Value
gene id AMCG00017539
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8970191 ~ 8972241 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017539
GTTGGCTGAACACAATGGCTATGTACAACGATAAGTCAATGGACAACTACCTTTATTCTTCCTACAATCCCTACTCTTACAGATACCTCAATCCTAAACACAAGGGCGGAGGCTGGCGGCAGAAGAGTTACCTGTCCGGCTATGAGGACGCGGAGACGTACTTTGACAACCACCAAAGAGCGCAACTGAAGTCCATCTTGTCTCAGATTAACCCCAACCTGACGCCGAGGCTGCGGAAGGCCAACACCAAGGACGTGGGGATCCAGGTCAACCCTAAAACGGACGCCTCCGTGCAGTGCTCGCTGGGCCCCAGGACTCTCCTGGCGCGGAAACGAGAGGCTCTGCGGAGGAGGAGACAGGAGATCCAGGCCCCTGGGAGCCCCGTCAGCAATATCGCCAAGACGGTGCGCTTTCCGCGGACCCTAGCCCTATACTCTCCCATCGCCTCCAGGAGGCTGACCTCTTTCCTGGAGGAGGAGCCGGACGAAACGAAGTCCCCGGCAGAACCGCCAGGTACCTCCGAGGACGCAGGAGAAGCAGGCCGTGCCCAGGCCGCAGTGGAGGACCGGGCGGACACCGCGGCGGAGGAGAAGCCCAGCCCGGAGGCGGACGAGAGCAGCCGGGAAGCGCCGCCGGACGAAGCCGAGGTCCCTCCGAAAGACGCACCGGAGGCACCCAAGTCCAAAGCCCGAGTGAGGTTCCAGTTCTTGGAACAGAAGTACGGCTATTACCACTGCAGGGACTGCAATCTGCGATGGGAGAGCGCCTACGTCTGGTGTGTGCAGGGAACTAATAAAGTTTATTTCAAGCAATTCTGTAGAACGTGCCAGAAATCCTATAACCCGTACCGCGTGGAGGACATCACCTGCCAGACCTGCAAACAGTCCAGGTGCTCCTGTCCCACGACCATGCGCCACGTCGACCCCAAGAGGCCGCACCGGCAGGACCTGTGCGGGCGGTGCAAGGGCAAGCGCCTCTCCTGCGACAGCACTTTcagctttaaatacattatttaggtTACTTTCATGATGGTTCCTGCAGGACTTGGTTCACTGCTGTTTTCAGAAGACTAGTGCGATGCTGCATTTCTCTCCATTGCTTAAGCTGTATGAAGTTCAAGACTGTGTTGGTCAATGAATGgagactttatttttatttttttggtccaactttttttgaaaacataagtgtgggatttttgtttctttacatgGAAAGAAGTCGCAGGAActaaataaatggaaattggtgCATTTGGTTGGTTCATTTTTGCTTAGATCTCTAAACTGATTCTACTCTTCTCTTCAGTGAGAACTGGAGTATCTTAAGGACACTTGTCTGACGAGCTTCCACTGCGGATGGAGTTCTTTATTGCCACGGTCTACAAGGATCTGGGCCTGAGATGAGTGGTGTAAGGGGTGGCCCTCTAGGGTTTTAGTCTAACGCGAGGGGAGAAAACTCCCCCGCTTCCTACTCCTGATCATTTCCCGAGTGTATCGGCAAGTGCAGTCATGGGTGCGGTGAGTGATTCAGCAGCTAAATGCACATGGCAGCTGAATGATCTTATCTAGGTCATAGGAAGTCTCCTTGTCCTGTTCATTTAGGTGCTTTTGCTTCCCCAGTGCTGTACGTCTTGTC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017539 True 1638 mRNA 0.53 4 8970191 8972241

Neighbor

gene id symbol gene type direction distance location
AMCG00017535 NA coding downstream 126733 8836853 ~ 8843458 (-)
AMCG00017537 NA coding downstream 135824 8815050 ~ 8834367 (-)
AMCG00017536 LOC107683324 coding downstream 171997 8790182 ~ 8798194 (-)
AMCG00017532 NA coding downstream 189970 8772209 ~ 8780221 (-)
AMCG00017528 NA coding downstream 239478 8701878 ~ 8730713 (-)
AMCG00017540 slc10a4,LOC102785779 coding upstream 1374 8973615 ~ 8976665 (-)
AMCG00017541 NA coding upstream 4997 8977238 ~ 9013172 (-)
AMCG00017542 LOC107735811 coding upstream 48892 9021133 ~ 9034005 (-)
AMCG00017546 LOC107736140,LOC107682575 coding upstream 178603 9150844 ~ 9156267 (-)
AMCG00017547 sh3rf1 coding upstream 192620 9164861 ~ 9184746 (-)
G91064 NA non-coding downstream 364565 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 588521 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 683074 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 740630 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 805286 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 622689 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 660404 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 690323 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 703305 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 705230 9677471 ~ 9680221 (-)
G91119 NA other downstream 214284 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 221448 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 455236 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 973596 7992137 ~ 7996595 (-)
G90937 NA other downstream 1137599 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1389059 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2531783 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 2905119 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3335540 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5460917 14433158 ~ 14484818 (-)

Expression


Co-expression Network