AMCG00017542 (LOC107735811)


Basic Information

Item Value
gene id AMCG00017542
gene name LOC107735811
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9021133 ~ 9034005 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017542
AATACCACGTTAAAAACATTGTTCCTCTCATATGACAAAACCACATTCAAAACGCGCTGCGCTGAAATAAGAGCATGCGGAAGATCTATAGTGTTTTACTGCGGTCGTGACCTGAAAACCAAGGCCATGTAAATGGCGCGATACATAAACAGAGAttatgaaatagaaaataatttattttattcttccctCCTCCGATTTCAACGAAACCTGCACGGTTCTCTTTTGTGAAACTAGAACGgtgCCAAAGATGCCTGCATTTCGTCAAGTTGGAGAGAAGCAGCTTCCTAACCCGATCCTGTTCATGGTCTGGTCTCCAAAGAGAGACCTCATTGCCCTTGCAAATCAAGCTGGCGAGCTTTTGTTGCACCGCCTGGCAAACTTTCAGCGGGTCTGGACTTTACCTCCGAATGAAAATACTGGCAAAGAAATCACTTCACTAGCATGGAGACCAGATGGCAAAATTTTAGCCTTCAGTGTTGGGGACACTAATCAGGTGATTCTTTGTGATGTGGAGAAAGCAGAAATCTTGCACATTTTCCCAGTCGAAACCCCAGTATCATGTATGCACTGGATGGAAGTTTCAGACGATAACAGTGTCCTCTCATCATTTGATAATGCTGAAGATGAATCCGATTTTTTCCTGCCTAAGTTACCAACTCTTCCAAAAAGCTACAGCACAGCATCCAAAATGTCCAGGCTAAACATACTCGTTCTTGGCGGCAACTCTGGGTTTATTGAGCTCTATGCCTATGGAATGTACAAGATCGCTACACTGACTGAGGTTGCAGGGACCTGTTGCAGTTTGTGCCTCTCCAGTGACCTGAAATCCCTGTCAGTTGTCACAGAAATCAAATCCACTAACGGCGACCCCGAAATCCGATATAATCAGCTCGACACCAGCCTGCTGTCTGACTACCTCCCTGAAGTCACTCGAATGGCAAGGAAGTTCACTCACATCTCCACACTGCTACAGtaccAGAAGCAGTCACTGACGTGTATGTGTGAAGCTTGGGAAGATATCCTAATGCAGATGGACTTGCGGCTTACGAAATTTGTTCAGGAAAAGAATACGGAAACATCAGTTCAGGATGAATTCCTTGACCTTCTCTTGTGGGGGAAGTCAAGTCCTGAACTTCAAGCACTGCTAATGAACCAGCTGACAGTAAAGGGCCTGAAAAAGCTTGGACAGTCTATTGAATCGTCTTACTCCAGTATTCAGAAACTGGTGATCAGCCACCTACAGAGTGGCTCAGAGGCTTTGCTGTACCACCTAAGTGAACTGAAGGGAATGGCCCTGTGGAAACAGAAGTACGAACCCCTCGGCCTCGATGCGTCTGGAATAGAAGATGCAATAACAGCTGTGGGGTCCTTCACACTCAAGGCAAATGAACTTTTACAGGTCATAGACAACAGTATGAAAAACTTCAAAGCATTTTTCAGATGGCTGTATGTAGCCATGCTGAGGATGTCTGAAGATCATGTGCTTCCAGAGTTAAATAAGATGACGCAGAAAGATATCGCCTTCGTGGCAGATTTCCTCTCAGAGCACTTTAGTGAGCAACCAGAACTCTATGACCGGAAAGGAAAATACTTCAACGTGGAAAGGGTTGGCCAGTACCTgaaggatgaggatgaggatcTGGTGTCTCCCCCCAACACTGAGGGGAATCAGTGGATCAGCTTCCTTCAGAGCAGCACGCaaagtCCCCTGCTGTTTCCATATTACCCTCAGAAATCCCTGCATTACGTCAAGAGGATGATGGAGGGGGTTATTGAGTTGTGTCTCCAGAAGCCTGCTGAAGTGATTGGACAGTCTGTGAAAGAAGCTGTTAGTATGGCACTCTACACAGTGCCAGCGAGGTGGAATGACAAAAAATCTGGCATGCATTACATAGTGTTCACCATGCCAGAGATATCACCCTGTAAACTGTACATAATGAGGAGAGCAACTGACCCATCCAGGTCTGTCACTAATGGCTTGTTATCCCTTGACCTTGGGAGTCTTCTATCCAGCAGTGCGGATGAGAGTGCAGAAGCCAGCCAGTACAGCTGCCTCGACGCCCGTCTGTATGATGACGAGACCCTGACAGTGGTCCTGAAGGAGGCCGTGGACGAGGACAAGGGCAGGATGCTGGCCCAGCTGCCGCTATCCTCGGTGTACATCGCTGAAGAGGAGTTTACATGGGACCCGGTCTTGAGACTGGACCAGCAGAGTGCTGATATCCCAGTCCAGAGCTTGGTCCTGGAGAACCAGTGGAGGACAATGGAAAACATGAAGGCACAGTATGTAGCAGTCAATGGGATCCGTAAAGTGTCCTGTGTGCTGAGCTCGAACCTGCGGCACATCCGAGTGTTTGAGATGGACGTGGAGGACGAGGAGTAAGAGGACAGAACCGAGTCCGGGTTAGCAGTGGTGATGTGGACAGGACGGGGACCCTGAAGGAGTATTCAGGGAAACCCCTTTACTTGACAGAGGAATAACCTCCCACCCCTGAACACAGACCCTATAGGGAAATGCACCACGATTCAGAGGGCGTTCCTGAAACTGCTATGAACACTTTTGCATTTGAGGGGAATCTCGCTTGACTGCAGTGTCTGACATGGGCAACCGGTGACAGGACAAATCCAATAAAGAATGATTCTTTGAGCTTTTTGAAAGTGATTTGTTGTCAACCCATTTTAGTGCACACACTGTCAGTATGTTAGAACTACCCCCATCCAACCCCAGAAAGAATTACTTGCCAGCAAATTAgaattgcatttcctttttttttactttacttgcATATTATTCAGTTAATGTACTGTTAACTTACTGGTGTTCATTCTATAACTAccaacacccacacacatttacatgGATTGGGTAGCTGACTGATATAGTCAGATGTGGCACCACTGTCAGCAGCTTTCTTTACCAGATGgtctagagcagtggttttcaaacaagtcctggagtaccccctgccctg

Function

NR:

description
PREDICTED: anaphase-promoting complex subunit 4-like

GO: NA

KEGG:

id description
K03351 APC4, ANAPC4; anaphase-promoting complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017542 True 2975 mRNA 0.47 27 9021133 9034005

Neighbor

gene id symbol gene type direction distance location
AMCG00017541 NA coding downstream 7961 8977238 ~ 9013172 (-)
AMCG00017540 slc10a4,LOC102785779 coding downstream 44468 8973615 ~ 8976665 (-)
AMCG00017539 NA coding downstream 48892 8970191 ~ 8972241 (-)
AMCG00017535 NA coding downstream 177675 8836853 ~ 8843458 (-)
AMCG00017537 NA coding downstream 186766 8815050 ~ 8834367 (-)
AMCG00017546 LOC107736140,LOC107682575 coding upstream 116839 9150844 ~ 9156267 (-)
AMCG00017547 sh3rf1 coding upstream 130856 9164861 ~ 9184746 (-)
AMCG00017549 NA coding upstream 194995 9229000 ~ 9231753 (-)
AMCG00017548 NA coding upstream 211211 9245216 ~ 9285503 (-)
AMCG00017550 nwd2 coding upstream 308109 9342114 ~ 9372079 (-)
G91064 NA non-coding downstream 415507 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 639463 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 734016 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 791572 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 856228 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 560925 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 598640 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 628559 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 641541 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 643466 9677471 ~ 9680221 (-)
G91119 NA other downstream 265226 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 272390 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 506178 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 1024538 7992137 ~ 7996595 (-)
G90937 NA other downstream 1188541 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1327295 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2470019 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 2843355 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3273776 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5399153 14433158 ~ 14484818 (-)

Expression


Co-expression Network