AMCG00017546 (LOC107736140,LOC107682575)


Basic Information

Item Value
gene id AMCG00017546
gene name LOC107736140,LOC107682575
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9150844 ~ 9156267 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017546
AGTTAGTCCTGGGTATTTGAGCTGCTCAGGTGAATGAAAGCCACGCACTCTCTGCCGCTCTGATTTCTATGGCCTTCGTGCGGGTCTCGACTGAGCTGTGGTTGACTGTTTTCTGGCTCCCCCTGCTGGTTCGCCACGGAAGTACAGCATGTCCAAAGTGTGTGCCGTGTTCGGGGGCTCCAGGGGGATCGGGAAGGCCGTCTCTCAGTTGCTGGCTAAGAAGGGACATCGAGTCATTGTCGTTGCAAGAAATCTCGAAGCTGCCCAGTCCACTGCCACGTCTTTGGGAGAGGACCACCTTGCTCTGAGCTGTGATGTTTCGAAAGAACACGACGTCCaggaaacatttgaaaagattCAGTCGAGCTGTGGAAACATTAACTATCTGGTCAATGCAGCCGGTCTGAACAGGGACGGGCTGTTGTTGCGGACCAAGACAGAAGACATGGTCACCCTGCTGCACACCAACCTCCTGGGCGCCATGCTGACCTGCAAAAGTGCTTTAAGAGGCATGCTGCACAACCAAGGAGGAGCCATTGTAAATATAGGCAGCGTCGTTGGGCTGAAGGGGAATGCGGGGCAGAGTGTGTACAGCGCCAGTAAGGCCGGGCTGGAGGGCTTCACACGCTCTCTTGCCAAGGAAGTGGCTGCGAGAAACATTCGGGTTAACTTGGTCGCTCCAGGCttcatacacacagacatgacGGCGGGCATGAACGTTGAGGAGCTGAGCAGGAACATCCCACTGGGACGCTTCGGGGAGCCCCAAGAGGTGGCCCAGGCCGTCCTCTTTCTCCTGGAGTCTCCCTACGTTACTGGGCAGGTTCTGGTTGTGGATGGTGGACTTCAGCTGGCCATGTAGACTCTAatgtttctgtctgtttctggTGAGAACAGGATGCTCTTCTTGGGTGAGCTCTTGATTTCTGTTCCTCAGGCAATAGCAGAGCACAATACGCTGCAGGCTGTATTTAAACCTTGAATGAAATAATGTATCGCTCATGATAGGACTTAGGAATGCAGAGGACAATTAAAGAAATTATAACTGATGCCATGATGCTTTATGTGAGAATATTGTGACTGAATCTAAGAGGGACATTTTATCAACGGAGCAGCTTATCTATGCTGCCACCAAAGGCAAATGGCTGCTCTGCTCATAGATAAGTCTGATCAGTAATGGTTCAGGGTATCTTATACATGTGTCATCGATTTACTTATTTCAGGATTTTATTGACAATATTTGAATGTCTGAAACAGTGCTGTAATACTGATGTCATaccataaaaaaattataactcACTCATGTCTGGTTTAAGTACCACagtgacattaaaataacagcacAAAGCTGCTG

Function

NR:

description
PREDICTED: carbonyl reductase family member 4-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00059 fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017546 True 1354 mRNA 0.49 6 9150844 9156267

Neighbor

gene id symbol gene type direction distance location
AMCG00017542 LOC107735811 coding downstream 116839 9021133 ~ 9034005 (-)
AMCG00017541 NA coding downstream 137672 8977238 ~ 9013172 (-)
AMCG00017540 slc10a4,LOC102785779 coding downstream 174179 8973615 ~ 8976665 (-)
AMCG00017539 NA coding downstream 178603 8970191 ~ 8972241 (-)
AMCG00017535 NA coding downstream 307386 8836853 ~ 8843458 (-)
AMCG00017547 sh3rf1 coding upstream 8594 9164861 ~ 9184746 (-)
AMCG00017549 NA coding upstream 72733 9229000 ~ 9231753 (-)
AMCG00017548 NA coding upstream 88949 9245216 ~ 9285503 (-)
AMCG00017550 nwd2 coding upstream 185847 9342114 ~ 9372079 (-)
AMCG00017554 NA coding upstream 339461 9495728 ~ 9547314 (-)
G91064 NA non-coding downstream 545218 8603621 ~ 8605626 (-)
G91016 NA non-coding downstream 769174 8289765 ~ 8381670 (-)
G91005 NA non-coding downstream 863727 8286889 ~ 8287117 (-)
G90992 NA non-coding downstream 921283 8229315 ~ 8229561 (-)
G90965 NA non-coding downstream 985939 8164654 ~ 8164905 (-)
G91294 NA non-coding upstream 438663 9594930 ~ 9595162 (-)
G91297 NA non-coding upstream 476378 9632645 ~ 9632859 (-)
G91298 NA non-coding upstream 506297 9662564 ~ 9662788 (-)
G91300 NA non-coding upstream 519279 9675546 ~ 9675779 (-)
G91301 NA non-coding upstream 521204 9677471 ~ 9680221 (-)
G91119 NA other downstream 394937 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 402101 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 635889 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 1154249 7992137 ~ 7996595 (-)
G90937 NA other downstream 1318252 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 1205033 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 2347757 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 2721093 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 3151514 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 5276891 14433158 ~ 14484818 (-)

Expression


Co-expression Network